Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3020 and GFF3021 overlap by 4 nucleotides GFF3021 and GFF3022 overlap by 4 nucleotides GFF3022 and GFF3023 overlap by 1 nucleotides GFF3023 and GFF3024 overlap by 4 nucleotides
GFF3020 - Virginiamycin B lyase, at 745,159 to 746,091
GFF3020
GFF3021 - hypothetical protein, at 746,088 to 746,636
GFF3021
GFF3022 - hypothetical protein, at 746,633 to 747,607
GFF3022
GFF3023 - hypothetical protein, at 747,607 to 748,185
GFF3023
GFF3024 - hypothetical protein, at 748,182 to 749,225
GFF3024
Position (kb) 746
747
748 Strain fitness (log2 ratio) -1
0
1 at 745.770 kb on - strand, within GFF3020 at 746.278 kb on + strand, within GFF3021 at 746.278 kb on + strand, within GFF3021 at 746.278 kb on + strand, within GFF3021 at 746.279 kb on - strand, within GFF3021 at 746.279 kb on - strand, within GFF3021 at 746.279 kb on - strand, within GFF3021 at 746.685 kb on - strand at 746.697 kb on + strand at 746.698 kb on - strand at 746.698 kb on - strand at 746.698 kb on - strand at 746.829 kb on + strand, within GFF3022 at 746.829 kb on + strand, within GFF3022 at 746.830 kb on - strand, within GFF3022 at 746.830 kb on - strand, within GFF3022 at 746.830 kb on - strand, within GFF3022 at 746.830 kb on - strand, within GFF3022 at 746.830 kb on - strand, within GFF3022 at 747.013 kb on - strand, within GFF3022 at 747.013 kb on - strand, within GFF3022 at 747.228 kb on + strand, within GFF3022 at 747.234 kb on + strand, within GFF3022 at 747.234 kb on + strand, within GFF3022 at 747.234 kb on + strand, within GFF3022 at 747.234 kb on + strand, within GFF3022 at 747.235 kb on - strand, within GFF3022 at 747.235 kb on - strand, within GFF3022 at 747.333 kb on + strand, within GFF3022 at 747.334 kb on - strand, within GFF3022 at 747.456 kb on + strand, within GFF3022 at 747.497 kb on + strand, within GFF3022 at 747.498 kb on - strand, within GFF3022 at 747.498 kb on - strand, within GFF3022 at 747.508 kb on - strand, within GFF3022 at 747.738 kb on - strand, within GFF3023 at 747.881 kb on + strand, within GFF3023 at 748.345 kb on + strand, within GFF3024 at 748.558 kb on + strand, within GFF3024
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 745,770 - GFF3020 0.65 -0.2 746,278 + GFF3021 0.35 +1.0 746,278 + GFF3021 0.35 -0.5 746,278 + GFF3021 0.35 -1.3 746,279 - GFF3021 0.35 +0.1 746,279 - GFF3021 0.35 -0.0 746,279 - GFF3021 0.35 -0.0 746,685 - -0.3 746,697 + +0.5 746,698 - -0.4 746,698 - +0.1 746,698 - -0.3 746,829 + GFF3022 0.20 +1.0 746,829 + GFF3022 0.20 +0.4 746,830 - GFF3022 0.20 -0.1 746,830 - GFF3022 0.20 -0.2 746,830 - GFF3022 0.20 +0.2 746,830 - GFF3022 0.20 +1.2 746,830 - GFF3022 0.20 +0.5 747,013 - GFF3022 0.39 -1.0 747,013 - GFF3022 0.39 +0.6 747,228 + GFF3022 0.61 -0.7 747,234 + GFF3022 0.62 +0.2 747,234 + GFF3022 0.62 -0.7 747,234 + GFF3022 0.62 -0.5 747,234 + GFF3022 0.62 -0.1 747,235 - GFF3022 0.62 +0.7 747,235 - GFF3022 0.62 -1.6 747,333 + GFF3022 0.72 +0.4 747,334 - GFF3022 0.72 +0.2 747,456 + GFF3022 0.84 +1.0 747,497 + GFF3022 0.89 +0.7 747,498 - GFF3022 0.89 -0.1 747,498 - GFF3022 0.89 +0.6 747,508 - GFF3022 0.90 -0.6 747,738 - GFF3023 0.23 +0.3 747,881 + GFF3023 0.47 +0.6 748,345 + GFF3024 0.16 +0.3 748,558 + GFF3024 0.36 -0.7
Or see this region's nucleotide sequence