Strain Fitness in Xanthobacter sp. DMC5 around GFF30

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF29 and GFF30 are separated by 13 nucleotidesGFF30 and GFF31 are separated by 37 nucleotides GFF29 - 2,3-diketo-L-gulonate-binding periplasmic protein YiaO, at 33,943 to 34,971 GFF29 GFF30 - Sialic acid TRAP transporter permease protein SiaT, at 34,985 to 36,856 GFF30 GFF31 - Long-chain-fatty-acid--CoA ligase, at 36,894 to 38,456 GFF31 Position (kb) 34 35 36 37Strain fitness (log2 ratio) -2 -1 0 1at 34.312 kb on + strand, within GFF29at 34.312 kb on + strand, within GFF29at 34.312 kb on + strand, within GFF29at 34.313 kb on - strand, within GFF29at 34.565 kb on - strand, within GFF29at 34.621 kb on + strand, within GFF29at 34.621 kb on + strand, within GFF29at 34.622 kb on - strand, within GFF29at 34.622 kb on - strand, within GFF29at 34.652 kb on - strand, within GFF29at 35.035 kb on - strandat 35.141 kb on + strandat 35.141 kb on + strandat 35.142 kb on - strandat 35.142 kb on - strandat 35.245 kb on + strand, within GFF30at 35.245 kb on + strand, within GFF30at 35.245 kb on + strand, within GFF30at 35.246 kb on - strand, within GFF30at 35.356 kb on + strand, within GFF30at 35.357 kb on + strand, within GFF30at 35.358 kb on - strand, within GFF30at 35.452 kb on + strand, within GFF30at 35.452 kb on + strand, within GFF30at 35.679 kb on - strand, within GFF30at 35.725 kb on + strand, within GFF30at 35.726 kb on - strand, within GFF30at 35.726 kb on - strand, within GFF30at 35.870 kb on + strand, within GFF30at 35.870 kb on + strand, within GFF30at 35.871 kb on - strand, within GFF30at 35.871 kb on - strand, within GFF30at 35.871 kb on - strand, within GFF30at 35.874 kb on + strand, within GFF30at 35.874 kb on + strand, within GFF30at 35.874 kb on + strand, within GFF30at 35.875 kb on - strand, within GFF30at 35.891 kb on + strand, within GFF30at 35.891 kb on + strand, within GFF30at 35.891 kb on + strand, within GFF30at 35.892 kb on - strand, within GFF30at 35.892 kb on - strand, within GFF30at 35.892 kb on - strand, within GFF30at 35.892 kb on - strand, within GFF30at 36.327 kb on - strand, within GFF30at 36.380 kb on + strand, within GFF30at 36.380 kb on + strand, within GFF30at 36.381 kb on - strand, within GFF30at 36.397 kb on + strand, within GFF30at 36.657 kb on - strand, within GFF30at 36.657 kb on - strand, within GFF30at 36.657 kb on - strand, within GFF30at 36.719 kb on + strandat 36.719 kb on + strandat 36.720 kb on - strandat 36.720 kb on - strandat 36.722 kb on + strandat 36.723 kb on - strandat 36.782 kb on + strandat 37.080 kb on + strand, within GFF31at 37.081 kb on - strand, within GFF31at 37.108 kb on - strand, within GFF31at 37.108 kb on - strand, within GFF31at 37.272 kb on + strand, within GFF31at 37.405 kb on - strand, within GFF31at 37.405 kb on - strand, within GFF31at 37.405 kb on - strand, within GFF31at 37.405 kb on - strand, within GFF31at 37.458 kb on - strand, within GFF31at 37.475 kb on + strand, within GFF31at 37.532 kb on + strand, within GFF31at 37.532 kb on + strand, within GFF31at 37.532 kb on + strand, within GFF31at 37.532 kb on + strand, within GFF31at 37.532 kb on + strand, within GFF31at 37.532 kb on + strand, within GFF31at 37.532 kb on + strand, within GFF31at 37.533 kb on - strand, within GFF31at 37.533 kb on - strand, within GFF31at 37.533 kb on - strand, within GFF31at 37.533 kb on - strand, within GFF31at 37.533 kb on - strand, within GFF31at 37.533 kb on - strand, within GFF31at 37.533 kb on - strand, within GFF31at 37.533 kb on - strand, within GFF31at 37.533 kb on - strand, within GFF31at 37.576 kb on - strand, within GFF31at 37.576 kb on - strand, within GFF31at 37.600 kb on - strand, within GFF31at 37.686 kb on + strand, within GFF31at 37.686 kb on + strand, within GFF31at 37.686 kb on + strand, within GFF31at 37.687 kb on - strand, within GFF31at 37.729 kb on - strand, within GFF31

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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34,312 + GFF29 0.36 -0.6
34,312 + GFF29 0.36 -0.1
34,312 + GFF29 0.36 +0.2
34,313 - GFF29 0.36 +0.5
34,565 - GFF29 0.60 +0.0
34,621 + GFF29 0.66 +0.3
34,621 + GFF29 0.66 -0.0
34,622 - GFF29 0.66 -1.4
34,622 - GFF29 0.66 -1.9
34,652 - GFF29 0.69 +0.3
35,035 - +0.0
35,141 + +0.0
35,141 + +0.1
35,142 - -1.0
35,142 - +1.0
35,245 + GFF30 0.14 -0.5
35,245 + GFF30 0.14 -0.9
35,245 + GFF30 0.14 -0.5
35,246 - GFF30 0.14 +0.6
35,356 + GFF30 0.20 +0.5
35,357 + GFF30 0.20 +0.6
35,358 - GFF30 0.20 -0.9
35,452 + GFF30 0.25 -0.7
35,452 + GFF30 0.25 -0.7
35,679 - GFF30 0.37 -0.0
35,725 + GFF30 0.40 +0.5
35,726 - GFF30 0.40 +0.2
35,726 - GFF30 0.40 -0.1
35,870 + GFF30 0.47 -0.9
35,870 + GFF30 0.47 -1.2
35,871 - GFF30 0.47 +0.1
35,871 - GFF30 0.47 +0.8
35,871 - GFF30 0.47 +0.3
35,874 + GFF30 0.47 -0.1
35,874 + GFF30 0.47 -0.3
35,874 + GFF30 0.47 +0.5
35,875 - GFF30 0.48 -1.7
35,891 + GFF30 0.48 -0.7
35,891 + GFF30 0.48 +0.2
35,891 + GFF30 0.48 -0.1
35,892 - GFF30 0.48 +0.6
35,892 - GFF30 0.48 +0.4
35,892 - GFF30 0.48 -0.0
35,892 - GFF30 0.48 -0.0
36,327 - GFF30 0.72 +0.3
36,380 + GFF30 0.75 -1.1
36,380 + GFF30 0.75 -0.2
36,381 - GFF30 0.75 -0.3
36,397 + GFF30 0.75 +0.6
36,657 - GFF30 0.89 +0.1
36,657 - GFF30 0.89 -0.0
36,657 - GFF30 0.89 -0.8
36,719 + -0.1
36,719 + +0.5
36,720 - -0.2
36,720 - +0.4
36,722 + -0.7
36,723 - +0.2
36,782 + -0.6
37,080 + GFF31 0.12 +0.4
37,081 - GFF31 0.12 -1.0
37,108 - GFF31 0.14 -0.9
37,108 - GFF31 0.14 +1.0
37,272 + GFF31 0.24 -0.0
37,405 - GFF31 0.33 +0.8
37,405 - GFF31 0.33 -0.2
37,405 - GFF31 0.33 -0.4
37,405 - GFF31 0.33 +0.5
37,458 - GFF31 0.36 -1.6
37,475 + GFF31 0.37 -0.5
37,532 + GFF31 0.41 -0.3
37,532 + GFF31 0.41 +0.5
37,532 + GFF31 0.41 -0.5
37,532 + GFF31 0.41 -0.2
37,532 + GFF31 0.41 -1.2
37,532 + GFF31 0.41 -0.3
37,532 + GFF31 0.41 +0.1
37,533 - GFF31 0.41 +1.2
37,533 - GFF31 0.41 +0.0
37,533 - GFF31 0.41 -1.2
37,533 - GFF31 0.41 +0.8
37,533 - GFF31 0.41 -0.1
37,533 - GFF31 0.41 -1.0
37,533 - GFF31 0.41 +0.5
37,533 - GFF31 0.41 -0.4
37,533 - GFF31 0.41 +0.2
37,576 - GFF31 0.44 +0.1
37,576 - GFF31 0.44 +0.6
37,600 - GFF31 0.45 +0.4
37,686 + GFF31 0.51 -0.4
37,686 + GFF31 0.51 +0.8
37,686 + GFF31 0.51 -0.3
37,687 - GFF31 0.51 +0.2
37,729 - GFF31 0.53 +1.5

Or see this region's nucleotide sequence