Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2955 and GFF2956 are separated by 199 nucleotides GFF2956 and GFF2957 are separated by 11 nucleotides GFF2957 and GFF2958 overlap by 4 nucleotides
GFF2955 - Riboflavin-binding protein RibY, at 679,875 to 680,903
GFF2955
GFF2956 - Riboflavin transport system permease protein RibX, at 681,103 to 681,927
GFF2956
GFF2957 - Ureidoglycolate lyase, at 681,939 to 682,778
GFF2957
GFF2958 - hypothetical protein, at 682,775 to 683,551
GFF2958
Position (kb) 681
682 Strain fitness (log2 ratio) -2
-1
0
1
2 at 680.251 kb on + strand, within GFF2955 at 680.251 kb on + strand, within GFF2955 at 680.282 kb on + strand, within GFF2955 at 680.422 kb on + strand, within GFF2955 at 680.704 kb on + strand, within GFF2955 at 680.705 kb on - strand, within GFF2955 at 680.707 kb on + strand, within GFF2955 at 680.749 kb on + strand, within GFF2955 at 680.750 kb on - strand, within GFF2955 at 680.750 kb on - strand, within GFF2955 at 680.755 kb on + strand, within GFF2955 at 680.755 kb on + strand, within GFF2955 at 680.756 kb on - strand, within GFF2955 at 680.795 kb on + strand, within GFF2955 at 680.946 kb on - strand at 681.070 kb on + strand at 681.071 kb on - strand at 681.104 kb on + strand at 681.105 kb on - strand at 681.270 kb on - strand, within GFF2956 at 681.270 kb on - strand, within GFF2956 at 681.606 kb on - strand, within GFF2956 at 681.611 kb on + strand, within GFF2956 at 681.611 kb on + strand, within GFF2956 at 681.611 kb on + strand, within GFF2956 at 681.611 kb on + strand, within GFF2956 at 681.611 kb on + strand, within GFF2956 at 681.611 kb on + strand, within GFF2956 at 681.611 kb on + strand, within GFF2956 at 681.611 kb on + strand, within GFF2956 at 681.612 kb on - strand, within GFF2956 at 681.612 kb on - strand, within GFF2956 at 681.612 kb on - strand, within GFF2956 at 681.612 kb on - strand, within GFF2956 at 681.699 kb on - strand, within GFF2956 at 681.782 kb on + strand, within GFF2956 at 681.783 kb on - strand, within GFF2956 at 681.783 kb on - strand, within GFF2956 at 682.009 kb on + strand at 682.099 kb on + strand, within GFF2957 at 682.100 kb on - strand, within GFF2957 at 682.100 kb on - strand, within GFF2957 at 682.328 kb on - strand, within GFF2957 at 682.537 kb on + strand, within GFF2957 at 682.538 kb on - strand, within GFF2957 at 682.879 kb on - strand, within GFF2958
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 680,251 + GFF2955 0.37 +0.8 680,251 + GFF2955 0.37 -0.2 680,282 + GFF2955 0.40 +0.7 680,422 + GFF2955 0.53 +0.3 680,704 + GFF2955 0.81 +1.3 680,705 - GFF2955 0.81 +0.7 680,707 + GFF2955 0.81 +0.7 680,749 + GFF2955 0.85 -0.4 680,750 - GFF2955 0.85 -1.6 680,750 - GFF2955 0.85 +0.4 680,755 + GFF2955 0.86 +0.0 680,755 + GFF2955 0.86 -0.9 680,756 - GFF2955 0.86 -0.0 680,795 + GFF2955 0.89 +0.7 680,946 - -1.1 681,070 + +1.9 681,071 - -0.7 681,104 + +0.1 681,105 - -1.9 681,270 - GFF2956 0.20 -1.4 681,270 - GFF2956 0.20 -0.0 681,606 - GFF2956 0.61 +0.2 681,611 + GFF2956 0.62 -0.5 681,611 + GFF2956 0.62 -0.2 681,611 + GFF2956 0.62 -0.5 681,611 + GFF2956 0.62 -0.9 681,611 + GFF2956 0.62 +0.1 681,611 + GFF2956 0.62 +1.3 681,611 + GFF2956 0.62 -0.6 681,611 + GFF2956 0.62 -0.8 681,612 - GFF2956 0.62 -0.4 681,612 - GFF2956 0.62 +0.2 681,612 - GFF2956 0.62 +1.1 681,612 - GFF2956 0.62 +0.4 681,699 - GFF2956 0.72 -1.7 681,782 + GFF2956 0.82 +0.3 681,783 - GFF2956 0.82 -0.3 681,783 - GFF2956 0.82 -0.6 682,009 + +1.9 682,099 + GFF2957 0.19 -0.0 682,100 - GFF2957 0.19 -0.7 682,100 - GFF2957 0.19 +0.3 682,328 - GFF2957 0.46 +0.5 682,537 + GFF2957 0.71 +0.4 682,538 - GFF2957 0.71 +0.4 682,879 - GFF2958 0.13 -0.1
Or see this region's nucleotide sequence