Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2917 and GFF2918 are separated by 102 nucleotides GFF2918 and GFF2919 overlap by 4 nucleotides
GFF2917 - Hca operon transcriptional activator HcaR, at 635,071 to 635,964
GFF2917
GFF2918 - hypothetical protein, at 636,067 to 637,863
GFF2918
GFF2919 - hypothetical protein, at 637,860 to 639,926
GFF2919
Position (kb) 636
637
638 Strain fitness (log2 ratio) -1
0
1 at 635.365 kb on + strand, within GFF2917 at 635.365 kb on + strand, within GFF2917 at 635.366 kb on - strand, within GFF2917 at 635.447 kb on + strand, within GFF2917 at 635.548 kb on + strand, within GFF2917 at 635.548 kb on + strand, within GFF2917 at 635.548 kb on + strand, within GFF2917 at 635.548 kb on + strand, within GFF2917 at 635.548 kb on + strand, within GFF2917 at 635.549 kb on - strand, within GFF2917 at 635.570 kb on - strand, within GFF2917 at 635.570 kb on - strand, within GFF2917 at 635.570 kb on - strand, within GFF2917 at 635.801 kb on - strand, within GFF2917 at 635.935 kb on + strand at 635.936 kb on - strand at 635.936 kb on - strand at 635.936 kb on - strand at 636.302 kb on + strand, within GFF2918 at 636.860 kb on + strand, within GFF2918 at 636.860 kb on + strand, within GFF2918 at 636.860 kb on + strand, within GFF2918 at 636.861 kb on - strand, within GFF2918 at 637.146 kb on + strand, within GFF2918 at 637.213 kb on + strand, within GFF2918 at 637.214 kb on - strand, within GFF2918 at 637.250 kb on + strand, within GFF2918 at 637.250 kb on + strand, within GFF2918 at 637.250 kb on + strand, within GFF2918 at 637.287 kb on - strand, within GFF2918 at 637.385 kb on + strand, within GFF2918 at 637.385 kb on + strand, within GFF2918 at 637.385 kb on + strand, within GFF2918 at 637.386 kb on - strand, within GFF2918 at 637.386 kb on - strand, within GFF2918 at 637.386 kb on - strand, within GFF2918 at 637.386 kb on - strand, within GFF2918 at 637.386 kb on - strand, within GFF2918 at 637.421 kb on + strand, within GFF2918 at 637.421 kb on + strand, within GFF2918 at 637.422 kb on - strand, within GFF2918 at 637.916 kb on + strand at 638.654 kb on - strand, within GFF2919 at 638.654 kb on - strand, within GFF2919 at 638.710 kb on + strand, within GFF2919 at 638.711 kb on - strand, within GFF2919 at 638.756 kb on - strand, within GFF2919 at 638.770 kb on + strand, within GFF2919 at 638.771 kb on - strand, within GFF2919
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 635,365 + GFF2917 0.33 +1.4 635,365 + GFF2917 0.33 -0.0 635,366 - GFF2917 0.33 -0.9 635,447 + GFF2917 0.42 -0.7 635,548 + GFF2917 0.53 -0.2 635,548 + GFF2917 0.53 +0.1 635,548 + GFF2917 0.53 -0.6 635,548 + GFF2917 0.53 -0.2 635,548 + GFF2917 0.53 -0.2 635,549 - GFF2917 0.53 -1.1 635,570 - GFF2917 0.56 -0.1 635,570 - GFF2917 0.56 +0.4 635,570 - GFF2917 0.56 +0.5 635,801 - GFF2917 0.82 -0.6 635,935 + +0.7 635,936 - +0.3 635,936 - -0.1 635,936 - +0.1 636,302 + GFF2918 0.13 -0.2 636,860 + GFF2918 0.44 +0.8 636,860 + GFF2918 0.44 +0.0 636,860 + GFF2918 0.44 -0.6 636,861 - GFF2918 0.44 +0.0 637,146 + GFF2918 0.60 +0.9 637,213 + GFF2918 0.64 -0.2 637,214 - GFF2918 0.64 +1.1 637,250 + GFF2918 0.66 +0.4 637,250 + GFF2918 0.66 -0.4 637,250 + GFF2918 0.66 +0.1 637,287 - GFF2918 0.68 -0.5 637,385 + GFF2918 0.73 -0.3 637,385 + GFF2918 0.73 +0.1 637,385 + GFF2918 0.73 +1.0 637,386 - GFF2918 0.73 -0.9 637,386 - GFF2918 0.73 -0.2 637,386 - GFF2918 0.73 +0.3 637,386 - GFF2918 0.73 +1.7 637,386 - GFF2918 0.73 +1.2 637,421 + GFF2918 0.75 +0.5 637,421 + GFF2918 0.75 -1.1 637,422 - GFF2918 0.75 +0.4 637,916 + -0.3 638,654 - GFF2919 0.38 -0.4 638,654 - GFF2919 0.38 -1.1 638,710 + GFF2919 0.41 +0.5 638,711 - GFF2919 0.41 +0.1 638,756 - GFF2919 0.43 +0.5 638,770 + GFF2919 0.44 -0.6 638,771 - GFF2919 0.44 +0.1
Or see this region's nucleotide sequence