Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2912 and GFF2913 are separated by 12 nucleotides GFF2913 and GFF2914 are separated by 7 nucleotides GFF2914 and GFF2915 are separated by 11 nucleotides
GFF2912 - Spermidine/putrescine import ATP-binding protein PotA, at 630,114 to 631,169
GFF2912
GFF2913 - hypothetical protein, at 631,182 to 631,988
GFF2913
GFF2914 - hypothetical protein, at 631,996 to 632,922
GFF2914
GFF2915 - hypothetical protein, at 632,934 to 634,001
GFF2915
Position (kb) 631
632 Strain fitness (log2 ratio) -1
0
1 at 630.604 kb on - strand, within GFF2912 at 630.920 kb on - strand, within GFF2912 at 630.920 kb on - strand, within GFF2912 at 631.297 kb on + strand, within GFF2913 at 631.297 kb on + strand, within GFF2913 at 631.297 kb on + strand, within GFF2913 at 631.486 kb on + strand, within GFF2913 at 631.486 kb on + strand, within GFF2913 at 631.487 kb on - strand, within GFF2913 at 631.837 kb on + strand, within GFF2913 at 631.853 kb on - strand, within GFF2913 at 631.960 kb on + strand at 631.960 kb on + strand at 631.961 kb on - strand at 631.961 kb on - strand at 631.961 kb on - strand at 632.015 kb on + strand at 632.130 kb on - strand, within GFF2914 at 632.187 kb on - strand, within GFF2914 at 632.187 kb on - strand, within GFF2914 at 632.187 kb on - strand, within GFF2914 at 632.187 kb on - strand, within GFF2914 at 632.187 kb on - strand, within GFF2914 at 632.187 kb on - strand, within GFF2914 at 632.408 kb on + strand, within GFF2914 at 632.408 kb on + strand, within GFF2914 at 632.408 kb on + strand, within GFF2914 at 632.409 kb on - strand, within GFF2914 at 632.666 kb on + strand, within GFF2914 at 632.667 kb on - strand, within GFF2914 at 632.667 kb on - strand, within GFF2914 at 632.667 kb on - strand, within GFF2914 at 632.670 kb on - strand, within GFF2914 at 632.693 kb on + strand, within GFF2914 at 632.693 kb on + strand, within GFF2914 at 632.693 kb on + strand, within GFF2914 at 632.754 kb on - strand, within GFF2914 at 632.979 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 630,604 - GFF2912 0.46 +0.4 630,920 - GFF2912 0.76 +0.4 630,920 - GFF2912 0.76 +0.3 631,297 + GFF2913 0.14 -0.0 631,297 + GFF2913 0.14 -0.1 631,297 + GFF2913 0.14 +0.1 631,486 + GFF2913 0.38 +0.2 631,486 + GFF2913 0.38 -0.1 631,487 - GFF2913 0.38 -0.8 631,837 + GFF2913 0.81 -0.2 631,853 - GFF2913 0.83 -0.1 631,960 + +0.2 631,960 + +0.9 631,961 - -1.0 631,961 - +0.3 631,961 - -0.1 632,015 + +0.0 632,130 - GFF2914 0.14 -1.2 632,187 - GFF2914 0.21 +0.6 632,187 - GFF2914 0.21 +0.9 632,187 - GFF2914 0.21 +0.5 632,187 - GFF2914 0.21 -1.0 632,187 - GFF2914 0.21 -0.1 632,187 - GFF2914 0.21 +0.2 632,408 + GFF2914 0.44 +0.9 632,408 + GFF2914 0.44 +0.3 632,408 + GFF2914 0.44 +0.4 632,409 - GFF2914 0.45 -0.2 632,666 + GFF2914 0.72 -0.1 632,667 - GFF2914 0.72 -0.2 632,667 - GFF2914 0.72 +0.1 632,667 - GFF2914 0.72 -0.0 632,670 - GFF2914 0.73 +0.1 632,693 + GFF2914 0.75 +0.4 632,693 + GFF2914 0.75 -0.3 632,693 + GFF2914 0.75 -1.0 632,754 - GFF2914 0.82 -0.1 632,979 - +1.4
Or see this region's nucleotide sequence