Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2893 and GFF2894 overlap by 4 nucleotides GFF2894 and GFF2895 overlap by 4 nucleotides GFF2895 and GFF2896 overlap by 4 nucleotides GFF2896 and GFF2897 overlap by 4 nucleotides
GFF2893 - hypothetical protein, at 607,154 to 608,368
GFF2893
GFF2894 - hypothetical protein, at 608,365 to 609,228
GFF2894
GFF2895 - Caffeine dehydrogenase subunit alpha, at 609,225 to 611,582
GFF2895
GFF2896 - hypothetical protein, at 611,579 to 612,442
GFF2896
GFF2897 - Deacetylase, at 612,439 to 613,716
GFF2897
Position (kb) 609
610
611
612 Strain fitness (log2 ratio) -2
-1
0
1 at 608.616 kb on + strand, within GFF2894 at 608.617 kb on - strand, within GFF2894 at 608.681 kb on + strand, within GFF2894 at 608.682 kb on - strand, within GFF2894 at 608.952 kb on + strand, within GFF2894 at 608.952 kb on + strand, within GFF2894 at 609.014 kb on + strand, within GFF2894 at 609.014 kb on + strand, within GFF2894 at 609.015 kb on - strand, within GFF2894 at 609.015 kb on - strand, within GFF2894 at 609.021 kb on + strand, within GFF2894 at 609.021 kb on + strand, within GFF2894 at 609.022 kb on - strand, within GFF2894 at 609.022 kb on - strand, within GFF2894 at 609.022 kb on - strand, within GFF2894 at 609.101 kb on - strand, within GFF2894 at 609.408 kb on - strand at 609.409 kb on + strand at 609.409 kb on + strand at 609.409 kb on + strand at 609.409 kb on + strand at 609.410 kb on - strand at 609.475 kb on + strand, within GFF2895 at 609.475 kb on + strand, within GFF2895 at 609.476 kb on - strand, within GFF2895 at 609.476 kb on - strand, within GFF2895 at 609.532 kb on + strand, within GFF2895 at 609.532 kb on + strand, within GFF2895 at 609.533 kb on - strand, within GFF2895 at 609.628 kb on + strand, within GFF2895 at 609.691 kb on + strand, within GFF2895 at 609.724 kb on + strand, within GFF2895 at 609.787 kb on + strand, within GFF2895 at 610.014 kb on + strand, within GFF2895 at 610.014 kb on + strand, within GFF2895 at 610.014 kb on + strand, within GFF2895 at 610.014 kb on + strand, within GFF2895 at 610.014 kb on + strand, within GFF2895 at 610.015 kb on - strand, within GFF2895 at 610.226 kb on - strand, within GFF2895 at 610.571 kb on - strand, within GFF2895 at 610.571 kb on - strand, within GFF2895 at 610.647 kb on - strand, within GFF2895 at 610.699 kb on + strand, within GFF2895 at 610.699 kb on + strand, within GFF2895 at 610.700 kb on - strand, within GFF2895 at 610.700 kb on - strand, within GFF2895 at 610.700 kb on - strand, within GFF2895 at 610.714 kb on + strand, within GFF2895 at 610.844 kb on - strand, within GFF2895 at 610.844 kb on - strand, within GFF2895 at 610.844 kb on - strand, within GFF2895 at 611.460 kb on + strand at 611.460 kb on + strand at 611.460 kb on + strand at 611.461 kb on - strand at 611.461 kb on - strand at 611.461 kb on - strand at 611.461 kb on - strand at 611.461 kb on - strand at 611.461 kb on - strand at 612.004 kb on - strand, within GFF2896 at 612.004 kb on - strand, within GFF2896 at 612.090 kb on + strand, within GFF2896 at 612.223 kb on - strand, within GFF2896 at 612.223 kb on - strand, within GFF2896 at 612.255 kb on + strand, within GFF2896 at 612.360 kb on + strand at 612.360 kb on + strand at 612.360 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 608,616 + GFF2894 0.29 -0.2 608,617 - GFF2894 0.29 +0.6 608,681 + GFF2894 0.37 -0.4 608,682 - GFF2894 0.37 +0.4 608,952 + GFF2894 0.68 -0.3 608,952 + GFF2894 0.68 -0.9 609,014 + GFF2894 0.75 +1.1 609,014 + GFF2894 0.75 -0.6 609,015 - GFF2894 0.75 +0.6 609,015 - GFF2894 0.75 +0.0 609,021 + GFF2894 0.76 +1.2 609,021 + GFF2894 0.76 +0.9 609,022 - GFF2894 0.76 +0.3 609,022 - GFF2894 0.76 -0.6 609,022 - GFF2894 0.76 -0.4 609,101 - GFF2894 0.85 -0.1 609,408 - +0.8 609,409 + +0.1 609,409 + +0.3 609,409 + +0.2 609,409 + +1.5 609,410 - +1.3 609,475 + GFF2895 0.11 +0.7 609,475 + GFF2895 0.11 -0.2 609,476 - GFF2895 0.11 -0.1 609,476 - GFF2895 0.11 -0.1 609,532 + GFF2895 0.13 -1.5 609,532 + GFF2895 0.13 +0.1 609,533 - GFF2895 0.13 +0.2 609,628 + GFF2895 0.17 -1.7 609,691 + GFF2895 0.20 -0.3 609,724 + GFF2895 0.21 -1.1 609,787 + GFF2895 0.24 -0.8 610,014 + GFF2895 0.33 -1.5 610,014 + GFF2895 0.33 +0.4 610,014 + GFF2895 0.33 -0.2 610,014 + GFF2895 0.33 +0.3 610,014 + GFF2895 0.33 -1.1 610,015 - GFF2895 0.34 -0.5 610,226 - GFF2895 0.42 +1.5 610,571 - GFF2895 0.57 -0.7 610,571 - GFF2895 0.57 -0.1 610,647 - GFF2895 0.60 -1.0 610,699 + GFF2895 0.63 +0.3 610,699 + GFF2895 0.63 +0.7 610,700 - GFF2895 0.63 -0.4 610,700 - GFF2895 0.63 -0.5 610,700 - GFF2895 0.63 +0.7 610,714 + GFF2895 0.63 +0.3 610,844 - GFF2895 0.69 -0.2 610,844 - GFF2895 0.69 +0.5 610,844 - GFF2895 0.69 +0.1 611,460 + -2.5 611,460 + -0.3 611,460 + -1.6 611,461 - +0.6 611,461 - -0.1 611,461 - +0.1 611,461 - -0.1 611,461 - +0.7 611,461 - +0.5 612,004 - GFF2896 0.49 +0.4 612,004 - GFF2896 0.49 +0.8 612,090 + GFF2896 0.59 -0.6 612,223 - GFF2896 0.75 -0.6 612,223 - GFF2896 0.75 -0.3 612,255 + GFF2896 0.78 -0.4 612,360 + +0.5 612,360 + -0.1 612,360 + -0.2
Or see this region's nucleotide sequence