Strain Fitness in Xanthobacter sp. DMC5 around GFF2886

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2885 and GFF2886 are separated by 104 nucleotidesGFF2886 and GFF2887 are separated by 141 nucleotides GFF2885 - hypothetical protein, at 599,117 to 599,932 GFF2885 GFF2886 - hypothetical protein, at 600,037 to 600,855 GFF2886 GFF2887 - hypothetical protein, at 600,997 to 602,361 GFF2887 Position (kb) 600 601Strain fitness (log2 ratio) -2 -1 0 1 2at 599.070 kb on + strandat 599.146 kb on + strandat 599.272 kb on - strand, within GFF2885at 599.272 kb on - strand, within GFF2885at 599.289 kb on + strand, within GFF2885at 599.289 kb on + strand, within GFF2885at 599.314 kb on - strand, within GFF2885at 599.356 kb on - strand, within GFF2885at 599.356 kb on - strand, within GFF2885at 599.367 kb on + strand, within GFF2885at 599.367 kb on + strand, within GFF2885at 599.367 kb on + strand, within GFF2885at 599.368 kb on - strand, within GFF2885at 599.448 kb on + strand, within GFF2885at 599.448 kb on + strand, within GFF2885at 599.448 kb on + strand, within GFF2885at 599.448 kb on + strand, within GFF2885at 599.449 kb on - strand, within GFF2885at 599.487 kb on + strand, within GFF2885at 599.487 kb on + strand, within GFF2885at 599.488 kb on - strand, within GFF2885at 599.604 kb on + strand, within GFF2885at 599.604 kb on + strand, within GFF2885at 599.605 kb on - strand, within GFF2885at 599.784 kb on + strand, within GFF2885at 599.811 kb on - strand, within GFF2885at 599.927 kb on + strandat 599.927 kb on + strandat 599.927 kb on + strandat 600.089 kb on + strandat 600.092 kb on + strandat 600.092 kb on + strandat 600.093 kb on - strandat 600.093 kb on - strandat 600.222 kb on - strand, within GFF2886at 600.252 kb on - strand, within GFF2886at 600.280 kb on + strand, within GFF2886at 600.280 kb on + strand, within GFF2886at 600.280 kb on + strand, within GFF2886at 600.280 kb on + strand, within GFF2886at 600.280 kb on + strand, within GFF2886at 600.280 kb on + strand, within GFF2886at 600.281 kb on - strand, within GFF2886at 600.281 kb on - strand, within GFF2886at 600.553 kb on + strand, within GFF2886at 600.554 kb on - strand, within GFF2886at 600.554 kb on - strand, within GFF2886at 600.637 kb on + strand, within GFF2886at 600.637 kb on + strand, within GFF2886at 600.637 kb on + strand, within GFF2886at 600.638 kb on - strand, within GFF2886at 600.638 kb on - strand, within GFF2886at 600.638 kb on - strand, within GFF2886at 600.638 kb on - strand, within GFF2886at 600.638 kb on - strand, within GFF2886at 600.853 kb on + strandat 600.854 kb on - strandat 600.861 kb on - strandat 600.973 kb on + strandat 600.973 kb on + strandat 601.056 kb on + strandat 601.056 kb on + strandat 601.116 kb on + strandat 601.219 kb on + strand, within GFF2887at 601.219 kb on + strand, within GFF2887at 601.220 kb on - strand, within GFF2887at 601.262 kb on - strand, within GFF2887at 601.564 kb on + strand, within GFF2887at 601.564 kb on + strand, within GFF2887at 601.564 kb on + strand, within GFF2887at 601.606 kb on + strand, within GFF2887at 601.606 kb on + strand, within GFF2887at 601.607 kb on - strand, within GFF2887at 601.607 kb on - strand, within GFF2887at 601.607 kb on - strand, within GFF2887at 601.654 kb on + strand, within GFF2887at 601.672 kb on + strand, within GFF2887at 601.672 kb on + strand, within GFF2887at 601.672 kb on + strand, within GFF2887at 601.673 kb on - strand, within GFF2887at 601.673 kb on - strand, within GFF2887at 601.673 kb on - strand, within GFF2887at 601.673 kb on - strand, within GFF2887at 601.673 kb on - strand, within GFF2887at 601.687 kb on + strand, within GFF2887at 601.688 kb on - strand, within GFF2887at 601.688 kb on - strand, within GFF2887at 601.770 kb on - strand, within GFF2887at 601.790 kb on - strand, within GFF2887at 601.790 kb on - strand, within GFF2887at 601.806 kb on + strand, within GFF2887at 601.806 kb on + strand, within GFF2887at 601.807 kb on - strand, within GFF2887

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
599,070 + +0.3
599,146 + +0.8
599,272 - GFF2885 0.19 -0.9
599,272 - GFF2885 0.19 +0.1
599,289 + GFF2885 0.21 -0.9
599,289 + GFF2885 0.21 -0.6
599,314 - GFF2885 0.24 -0.5
599,356 - GFF2885 0.29 +0.5
599,356 - GFF2885 0.29 +0.3
599,367 + GFF2885 0.31 -0.2
599,367 + GFF2885 0.31 -2.1
599,367 + GFF2885 0.31 -0.3
599,368 - GFF2885 0.31 +0.9
599,448 + GFF2885 0.41 +0.8
599,448 + GFF2885 0.41 -0.5
599,448 + GFF2885 0.41 +1.1
599,448 + GFF2885 0.41 -1.2
599,449 - GFF2885 0.41 +1.9
599,487 + GFF2885 0.45 -0.3
599,487 + GFF2885 0.45 +0.0
599,488 - GFF2885 0.45 +0.3
599,604 + GFF2885 0.60 +0.3
599,604 + GFF2885 0.60 +1.9
599,605 - GFF2885 0.60 -0.5
599,784 + GFF2885 0.82 +0.7
599,811 - GFF2885 0.85 +0.3
599,927 + -0.7
599,927 + -0.8
599,927 + +0.1
600,089 + -0.3
600,092 + +0.9
600,092 + +0.3
600,093 - -0.1
600,093 - -0.0
600,222 - GFF2886 0.23 +0.2
600,252 - GFF2886 0.26 +0.2
600,280 + GFF2886 0.30 -0.1
600,280 + GFF2886 0.30 -0.8
600,280 + GFF2886 0.30 +0.3
600,280 + GFF2886 0.30 +0.5
600,280 + GFF2886 0.30 -1.3
600,280 + GFF2886 0.30 -0.8
600,281 - GFF2886 0.30 +1.5
600,281 - GFF2886 0.30 +1.0
600,553 + GFF2886 0.63 +0.6
600,554 - GFF2886 0.63 +0.3
600,554 - GFF2886 0.63 -0.4
600,637 + GFF2886 0.73 +1.4
600,637 + GFF2886 0.73 -0.0
600,637 + GFF2886 0.73 +0.7
600,638 - GFF2886 0.73 -0.2
600,638 - GFF2886 0.73 -1.2
600,638 - GFF2886 0.73 +1.3
600,638 - GFF2886 0.73 -0.8
600,638 - GFF2886 0.73 -0.2
600,853 + +0.8
600,854 - -0.3
600,861 - +1.0
600,973 + +0.1
600,973 + -0.3
601,056 + +0.3
601,056 + +0.9
601,116 + +0.4
601,219 + GFF2887 0.16 +0.9
601,219 + GFF2887 0.16 -0.2
601,220 - GFF2887 0.16 -0.1
601,262 - GFF2887 0.19 +0.2
601,564 + GFF2887 0.42 -0.3
601,564 + GFF2887 0.42 +0.6
601,564 + GFF2887 0.42 +0.7
601,606 + GFF2887 0.45 -0.8
601,606 + GFF2887 0.45 -0.6
601,607 - GFF2887 0.45 -0.0
601,607 - GFF2887 0.45 -0.1
601,607 - GFF2887 0.45 -0.7
601,654 + GFF2887 0.48 +0.6
601,672 + GFF2887 0.49 +0.3
601,672 + GFF2887 0.49 -0.8
601,672 + GFF2887 0.49 +0.1
601,673 - GFF2887 0.50 +1.0
601,673 - GFF2887 0.50 -0.9
601,673 - GFF2887 0.50 -0.8
601,673 - GFF2887 0.50 -1.2
601,673 - GFF2887 0.50 +0.8
601,687 + GFF2887 0.51 +1.0
601,688 - GFF2887 0.51 -0.1
601,688 - GFF2887 0.51 -0.9
601,770 - GFF2887 0.57 +0.1
601,790 - GFF2887 0.58 -0.3
601,790 - GFF2887 0.58 -1.6
601,806 + GFF2887 0.59 -0.2
601,806 + GFF2887 0.59 -0.2
601,807 - GFF2887 0.59 +0.7

Or see this region's nucleotide sequence