Strain Fitness in Xanthobacter sp. DMC5 around GFF2859

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2858 and GFF2859 are separated by 54 nucleotidesGFF2859 and GFF2860 are separated by 32 nucleotidesGFF2860 and GFF2861 overlap by 4 nucleotides GFF2858 - 4-hydroxybenzoate transporter PcaK, at 572,719 to 574,053 GFF2858 GFF2859 - Benzoate 1,2-dioxygenase electron transfer component, at 574,108 to 575,130 GFF2859 GFF2860 - 2-halobenzoate 1,2-dioxygenase small subunit, at 575,163 to 575,651 GFF2860 GFF2861 - 2-halobenzoate 1,2-dioxygenase large subunit, at 575,648 to 577,006 GFF2861 Position (kb) 574 575 576Strain fitness (log2 ratio) -2 -1 0 1 2at 573.220 kb on + strand, within GFF2858at 573.221 kb on - strand, within GFF2858at 573.221 kb on - strand, within GFF2858at 573.221 kb on - strand, within GFF2858at 573.248 kb on + strand, within GFF2858at 573.556 kb on + strand, within GFF2858at 573.556 kb on + strand, within GFF2858at 573.556 kb on + strand, within GFF2858at 573.557 kb on - strand, within GFF2858at 573.644 kb on + strand, within GFF2858at 573.644 kb on + strand, within GFF2858at 573.644 kb on + strand, within GFF2858at 573.645 kb on - strand, within GFF2858at 573.645 kb on - strand, within GFF2858at 573.645 kb on - strand, within GFF2858at 573.646 kb on + strand, within GFF2858at 573.926 kb on - strandat 573.951 kb on - strandat 573.951 kb on - strandat 574.089 kb on + strandat 574.110 kb on - strandat 574.151 kb on + strandat 574.232 kb on + strand, within GFF2859at 574.232 kb on + strand, within GFF2859at 574.356 kb on + strand, within GFF2859at 574.357 kb on - strand, within GFF2859at 574.359 kb on - strand, within GFF2859at 574.530 kb on - strand, within GFF2859at 574.530 kb on - strand, within GFF2859at 574.667 kb on + strand, within GFF2859at 574.667 kb on + strand, within GFF2859at 574.667 kb on + strand, within GFF2859at 574.667 kb on + strand, within GFF2859at 574.668 kb on - strand, within GFF2859at 574.668 kb on - strand, within GFF2859at 574.701 kb on + strand, within GFF2859at 574.709 kb on + strand, within GFF2859at 574.709 kb on + strand, within GFF2859at 574.710 kb on - strand, within GFF2859at 574.710 kb on - strand, within GFF2859at 574.710 kb on - strand, within GFF2859at 574.938 kb on + strand, within GFF2859at 574.939 kb on - strand, within GFF2859at 574.939 kb on - strand, within GFF2859at 574.941 kb on - strand, within GFF2859at 574.958 kb on + strand, within GFF2859at 574.958 kb on + strand, within GFF2859at 574.959 kb on - strand, within GFF2859at 574.959 kb on - strand, within GFF2859at 574.959 kb on - strand, within GFF2859at 574.959 kb on - strand, within GFF2859at 574.959 kb on - strand, within GFF2859at 574.959 kb on - strand, within GFF2859at 574.959 kb on - strand, within GFF2859at 574.959 kb on - strand, within GFF2859at 575.118 kb on + strandat 575.118 kb on + strandat 575.118 kb on + strandat 575.118 kb on + strandat 575.118 kb on + strandat 575.119 kb on - strandat 575.119 kb on - strandat 575.173 kb on + strandat 575.174 kb on - strandat 575.299 kb on + strand, within GFF2860at 575.299 kb on + strand, within GFF2860at 575.300 kb on - strand, within GFF2860at 575.326 kb on + strand, within GFF2860at 575.470 kb on + strand, within GFF2860at 575.470 kb on + strand, within GFF2860at 575.471 kb on - strand, within GFF2860at 575.471 kb on - strand, within GFF2860at 575.471 kb on - strand, within GFF2860at 575.473 kb on + strand, within GFF2860at 575.474 kb on - strand, within GFF2860at 575.474 kb on - strand, within GFF2860at 575.474 kb on - strand, within GFF2860at 575.474 kb on - strand, within GFF2860at 575.474 kb on - strand, within GFF2860at 575.474 kb on - strand, within GFF2860at 575.542 kb on + strand, within GFF2860at 575.542 kb on + strand, within GFF2860at 575.542 kb on + strand, within GFF2860at 575.543 kb on - strand, within GFF2860at 575.560 kb on + strand, within GFF2860at 575.560 kb on + strand, within GFF2860at 575.561 kb on - strand, within GFF2860at 575.615 kb on - strandat 575.706 kb on + strandat 575.706 kb on + strandat 575.706 kb on + strandat 575.707 kb on - strandat 575.707 kb on - strandat 575.859 kb on + strand, within GFF2861at 575.860 kb on - strand, within GFF2861at 575.860 kb on - strand, within GFF2861at 575.860 kb on - strand, within GFF2861at 575.934 kb on + strand, within GFF2861at 575.935 kb on - strand, within GFF2861at 575.990 kb on + strand, within GFF2861at 576.004 kb on - strand, within GFF2861at 576.078 kb on + strand, within GFF2861at 576.078 kb on + strand, within GFF2861at 576.078 kb on + strand, within GFF2861

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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573,220 + GFF2858 0.38 -0.6
573,221 - GFF2858 0.38 -0.4
573,221 - GFF2858 0.38 +0.3
573,221 - GFF2858 0.38 -0.1
573,248 + GFF2858 0.40 -0.9
573,556 + GFF2858 0.63 -1.0
573,556 + GFF2858 0.63 +0.1
573,556 + GFF2858 0.63 -0.5
573,557 - GFF2858 0.63 -0.3
573,644 + GFF2858 0.69 -0.6
573,644 + GFF2858 0.69 -0.5
573,644 + GFF2858 0.69 +0.4
573,645 - GFF2858 0.69 +0.5
573,645 - GFF2858 0.69 -2.1
573,645 - GFF2858 0.69 +0.1
573,646 + GFF2858 0.69 -0.3
573,926 - +0.0
573,951 - -0.6
573,951 - +1.2
574,089 + -1.3
574,110 - -1.1
574,151 + -0.4
574,232 + GFF2859 0.12 +0.9
574,232 + GFF2859 0.12 -1.7
574,356 + GFF2859 0.24 +1.5
574,357 - GFF2859 0.24 -1.1
574,359 - GFF2859 0.25 -1.5
574,530 - GFF2859 0.41 +0.6
574,530 - GFF2859 0.41 -0.7
574,667 + GFF2859 0.55 +0.5
574,667 + GFF2859 0.55 +0.9
574,667 + GFF2859 0.55 +0.0
574,667 + GFF2859 0.55 -0.3
574,668 - GFF2859 0.55 +0.7
574,668 - GFF2859 0.55 -0.1
574,701 + GFF2859 0.58 +0.3
574,709 + GFF2859 0.59 -0.5
574,709 + GFF2859 0.59 -0.8
574,710 - GFF2859 0.59 +0.6
574,710 - GFF2859 0.59 -0.7
574,710 - GFF2859 0.59 -1.1
574,938 + GFF2859 0.81 -1.4
574,939 - GFF2859 0.81 -0.7
574,939 - GFF2859 0.81 +0.8
574,941 - GFF2859 0.81 -0.1
574,958 + GFF2859 0.83 +0.1
574,958 + GFF2859 0.83 -0.5
574,959 - GFF2859 0.83 -0.3
574,959 - GFF2859 0.83 +0.2
574,959 - GFF2859 0.83 -0.6
574,959 - GFF2859 0.83 +0.4
574,959 - GFF2859 0.83 -0.2
574,959 - GFF2859 0.83 +0.7
574,959 - GFF2859 0.83 -0.3
574,959 - GFF2859 0.83 -0.8
575,118 + +0.9
575,118 + -0.9
575,118 + -0.3
575,118 + +0.6
575,118 + -2.1
575,119 - -0.8
575,119 - -1.0
575,173 + -1.3
575,174 - +0.2
575,299 + GFF2860 0.28 -0.1
575,299 + GFF2860 0.28 -0.8
575,300 - GFF2860 0.28 +0.7
575,326 + GFF2860 0.33 -0.4
575,470 + GFF2860 0.63 +0.2
575,470 + GFF2860 0.63 -0.3
575,471 - GFF2860 0.63 -0.1
575,471 - GFF2860 0.63 -0.8
575,471 - GFF2860 0.63 -0.3
575,473 + GFF2860 0.63 -0.7
575,474 - GFF2860 0.64 -1.2
575,474 - GFF2860 0.64 -0.5
575,474 - GFF2860 0.64 +0.7
575,474 - GFF2860 0.64 +0.4
575,474 - GFF2860 0.64 +0.2
575,474 - GFF2860 0.64 -0.8
575,542 + GFF2860 0.78 -1.0
575,542 + GFF2860 0.78 -0.9
575,542 + GFF2860 0.78 +0.7
575,543 - GFF2860 0.78 +0.6
575,560 + GFF2860 0.81 -0.8
575,560 + GFF2860 0.81 -1.0
575,561 - GFF2860 0.81 -0.7
575,615 - +0.5
575,706 + -0.4
575,706 + +0.1
575,706 + -0.9
575,707 - +0.4
575,707 - -0.1
575,859 + GFF2861 0.16 -0.5
575,860 - GFF2861 0.16 -0.7
575,860 - GFF2861 0.16 +1.4
575,860 - GFF2861 0.16 -0.6
575,934 + GFF2861 0.21 -0.1
575,935 - GFF2861 0.21 +0.4
575,990 + GFF2861 0.25 -1.8
576,004 - GFF2861 0.26 +0.1
576,078 + GFF2861 0.32 -0.1
576,078 + GFF2861 0.32 +0.1
576,078 + GFF2861 0.32 +1.9

Or see this region's nucleotide sequence