Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2843 and GFF2844 are separated by 59 nucleotides GFF2844 and GFF2845 are separated by 11 nucleotides GFF2845 and GFF2846 are separated by 104 nucleotides
GFF2843 - hypothetical protein, at 554,623 to 555,687
GFF2843
GFF2844 - Solute-binding protein, at 555,747 to 556,745
GFF2844
GFF2845 - putative enoyl-CoA hydratase echA8, at 556,757 to 557,530
GFF2845
GFF2846 - HTH-type transcriptional regulator PerR, at 557,635 to 558,522
GFF2846
Position (kb) 555
556
557 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 554.761 kb on + strand, within GFF2843 at 554.761 kb on + strand, within GFF2843 at 554.761 kb on + strand, within GFF2843 at 554.879 kb on + strand, within GFF2843 at 554.879 kb on + strand, within GFF2843 at 554.880 kb on - strand, within GFF2843 at 554.887 kb on + strand, within GFF2843 at 554.887 kb on + strand, within GFF2843 at 554.887 kb on + strand, within GFF2843 at 555.016 kb on + strand, within GFF2843 at 555.016 kb on + strand, within GFF2843 at 555.017 kb on - strand, within GFF2843 at 555.337 kb on + strand, within GFF2843 at 555.337 kb on + strand, within GFF2843 at 555.337 kb on + strand, within GFF2843 at 555.337 kb on + strand, within GFF2843 at 555.338 kb on - strand, within GFF2843 at 555.373 kb on + strand, within GFF2843 at 555.373 kb on + strand, within GFF2843 at 555.373 kb on + strand, within GFF2843 at 555.883 kb on - strand, within GFF2844 at 556.143 kb on - strand, within GFF2844 at 556.143 kb on - strand, within GFF2844 at 556.180 kb on + strand, within GFF2844 at 556.281 kb on + strand, within GFF2844 at 556.281 kb on + strand, within GFF2844 at 556.282 kb on - strand, within GFF2844 at 556.282 kb on - strand, within GFF2844 at 556.461 kb on + strand, within GFF2844 at 556.461 kb on + strand, within GFF2844 at 556.683 kb on + strand at 556.763 kb on + strand at 556.763 kb on + strand at 556.764 kb on - strand at 556.764 kb on - strand at 556.849 kb on + strand, within GFF2845 at 557.067 kb on - strand, within GFF2845 at 557.067 kb on - strand, within GFF2845 at 557.350 kb on + strand, within GFF2845 at 557.350 kb on + strand, within GFF2845 at 557.351 kb on - strand, within GFF2845 at 557.732 kb on + strand, within GFF2846 at 557.732 kb on + strand, within GFF2846 at 557.732 kb on + strand, within GFF2846 at 557.744 kb on + strand, within GFF2846 at 557.744 kb on + strand, within GFF2846 at 557.744 kb on + strand, within GFF2846 at 557.744 kb on + strand, within GFF2846 at 557.744 kb on + strand, within GFF2846 at 557.745 kb on - strand, within GFF2846 at 557.745 kb on - strand, within GFF2846 at 557.745 kb on - strand, within GFF2846 at 557.745 kb on - strand, within GFF2846 at 557.745 kb on - strand, within GFF2846 at 557.745 kb on - strand, within GFF2846 at 557.745 kb on - strand, within GFF2846 at 557.745 kb on - strand, within GFF2846 at 557.745 kb on - strand, within GFF2846
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 554,761 + GFF2843 0.13 -0.9 554,761 + GFF2843 0.13 +0.3 554,761 + GFF2843 0.13 +0.6 554,879 + GFF2843 0.24 -1.1 554,879 + GFF2843 0.24 +0.6 554,880 - GFF2843 0.24 -0.5 554,887 + GFF2843 0.25 +0.7 554,887 + GFF2843 0.25 -0.6 554,887 + GFF2843 0.25 -0.5 555,016 + GFF2843 0.37 -0.5 555,016 + GFF2843 0.37 +0.1 555,017 - GFF2843 0.37 -0.0 555,337 + GFF2843 0.67 +0.4 555,337 + GFF2843 0.67 +0.3 555,337 + GFF2843 0.67 -1.8 555,337 + GFF2843 0.67 +0.7 555,338 - GFF2843 0.67 +0.3 555,373 + GFF2843 0.70 -0.1 555,373 + GFF2843 0.70 -0.8 555,373 + GFF2843 0.70 +0.3 555,883 - GFF2844 0.14 -0.1 556,143 - GFF2844 0.40 +0.0 556,143 - GFF2844 0.40 +0.6 556,180 + GFF2844 0.43 -0.2 556,281 + GFF2844 0.53 -0.3 556,281 + GFF2844 0.53 +1.2 556,282 - GFF2844 0.54 +0.9 556,282 - GFF2844 0.54 -1.1 556,461 + GFF2844 0.71 -0.4 556,461 + GFF2844 0.71 -0.6 556,683 + -0.8 556,763 + -0.0 556,763 + +0.7 556,764 - -1.3 556,764 - -0.5 556,849 + GFF2845 0.12 +0.3 557,067 - GFF2845 0.40 -0.1 557,067 - GFF2845 0.40 -0.4 557,350 + GFF2845 0.77 +0.0 557,350 + GFF2845 0.77 -1.5 557,351 - GFF2845 0.77 +0.1 557,732 + GFF2846 0.11 +0.0 557,732 + GFF2846 0.11 +0.1 557,732 + GFF2846 0.11 -0.0 557,744 + GFF2846 0.12 -0.4 557,744 + GFF2846 0.12 +0.2 557,744 + GFF2846 0.12 +1.2 557,744 + GFF2846 0.12 +0.4 557,744 + GFF2846 0.12 -0.2 557,745 - GFF2846 0.12 +0.2 557,745 - GFF2846 0.12 -0.3 557,745 - GFF2846 0.12 -0.4 557,745 - GFF2846 0.12 -2.9 557,745 - GFF2846 0.12 -1.5 557,745 - GFF2846 0.12 -0.3 557,745 - GFF2846 0.12 -0.4 557,745 - GFF2846 0.12 +0.7 557,745 - GFF2846 0.12 +0.6
Or see this region's nucleotide sequence