Strain Fitness in Xanthobacter sp. DMC5 around GFF2806

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2805 and GFF2806 are separated by 265 nucleotidesGFF2806 and GFF2807 are separated by 183 nucleotides GFF2805 - Ferredoxin--NADP reductase, at 510,079 to 511,722 GFF2805 GFF2806 - Pyruvate dehydrogenase [ubiquinone], at 511,988 to 513,721 GFF2806 GFF2807 - N-ethylmaleimide reductase, at 513,905 to 515,053 GFF2807 Position (kb) 511 512 513 514Strain fitness (log2 ratio) -2 -1 0 1 2at 511.031 kb on + strand, within GFF2805at 511.601 kb on + strandat 511.602 kb on - strandat 511.688 kb on + strandat 511.688 kb on + strandat 511.688 kb on + strandat 511.688 kb on + strandat 511.688 kb on + strandat 511.688 kb on + strandat 511.688 kb on + strandat 511.688 kb on + strandat 511.689 kb on - strandat 511.689 kb on - strandat 511.689 kb on - strandat 511.786 kb on - strandat 511.798 kb on - strandat 511.813 kb on + strandat 511.813 kb on + strandat 511.813 kb on + strandat 511.814 kb on - strandat 511.814 kb on - strandat 511.814 kb on - strandat 511.814 kb on - strandat 511.814 kb on - strandat 511.814 kb on - strandat 511.816 kb on - strandat 511.827 kb on + strandat 511.827 kb on + strandat 511.827 kb on + strandat 511.828 kb on - strandat 511.828 kb on - strandat 512.001 kb on + strandat 512.051 kb on + strandat 512.230 kb on + strand, within GFF2806at 512.231 kb on - strand, within GFF2806at 512.231 kb on - strand, within GFF2806at 512.231 kb on - strand, within GFF2806at 512.319 kb on - strand, within GFF2806at 512.319 kb on - strand, within GFF2806at 512.402 kb on + strand, within GFF2806at 512.402 kb on + strand, within GFF2806at 512.402 kb on + strand, within GFF2806at 512.403 kb on - strand, within GFF2806at 512.403 kb on - strand, within GFF2806at 512.403 kb on - strand, within GFF2806at 512.403 kb on - strand, within GFF2806at 512.717 kb on + strand, within GFF2806at 512.717 kb on + strand, within GFF2806at 512.718 kb on - strand, within GFF2806at 512.729 kb on + strand, within GFF2806at 512.729 kb on + strand, within GFF2806at 512.730 kb on - strand, within GFF2806at 512.730 kb on - strand, within GFF2806at 512.730 kb on - strand, within GFF2806at 512.730 kb on - strand, within GFF2806at 512.730 kb on - strand, within GFF2806at 512.826 kb on - strand, within GFF2806at 512.917 kb on - strand, within GFF2806at 513.008 kb on + strand, within GFF2806at 513.008 kb on + strand, within GFF2806at 513.008 kb on + strand, within GFF2806at 513.008 kb on + strand, within GFF2806at 513.009 kb on - strand, within GFF2806at 513.009 kb on - strand, within GFF2806at 513.009 kb on - strand, within GFF2806at 513.080 kb on + strand, within GFF2806at 513.080 kb on + strand, within GFF2806at 513.080 kb on + strand, within GFF2806at 513.080 kb on + strand, within GFF2806at 513.081 kb on - strand, within GFF2806at 513.167 kb on + strand, within GFF2806at 513.167 kb on + strand, within GFF2806at 513.830 kb on - strandat 513.878 kb on - strandat 513.963 kb on - strandat 514.028 kb on + strand, within GFF2807at 514.031 kb on + strand, within GFF2807at 514.031 kb on + strand, within GFF2807at 514.031 kb on + strand, within GFF2807at 514.032 kb on - strand, within GFF2807at 514.032 kb on - strand, within GFF2807at 514.283 kb on + strand, within GFF2807at 514.284 kb on - strand, within GFF2807at 514.295 kb on + strand, within GFF2807at 514.295 kb on + strand, within GFF2807at 514.295 kb on + strand, within GFF2807at 514.344 kb on - strand, within GFF2807at 514.436 kb on + strand, within GFF2807at 514.437 kb on - strand, within GFF2807

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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511,031 + GFF2805 0.58 +0.5
511,601 + -0.8
511,602 - -0.9
511,688 + +0.5
511,688 + +1.4
511,688 + -0.4
511,688 + +0.6
511,688 + -1.1
511,688 + -0.7
511,688 + +0.9
511,688 + +0.2
511,689 - +0.7
511,689 - -1.7
511,689 - +1.6
511,786 - -0.4
511,798 - -0.6
511,813 + -1.4
511,813 + -0.4
511,813 + -1.3
511,814 - -0.5
511,814 - -0.4
511,814 - +0.7
511,814 - -1.2
511,814 - +0.6
511,814 - +0.9
511,816 - +0.2
511,827 + -0.1
511,827 + -0.4
511,827 + +0.3
511,828 - -0.5
511,828 - +1.9
512,001 + -0.0
512,051 + -0.1
512,230 + GFF2806 0.14 +0.1
512,231 - GFF2806 0.14 +0.3
512,231 - GFF2806 0.14 -0.7
512,231 - GFF2806 0.14 +0.3
512,319 - GFF2806 0.19 +0.1
512,319 - GFF2806 0.19 +0.2
512,402 + GFF2806 0.24 +0.7
512,402 + GFF2806 0.24 +0.2
512,402 + GFF2806 0.24 -1.1
512,403 - GFF2806 0.24 -0.3
512,403 - GFF2806 0.24 -0.3
512,403 - GFF2806 0.24 -0.4
512,403 - GFF2806 0.24 +1.2
512,717 + GFF2806 0.42 -0.1
512,717 + GFF2806 0.42 -2.1
512,718 - GFF2806 0.42 +0.1
512,729 + GFF2806 0.43 -0.9
512,729 + GFF2806 0.43 +0.9
512,730 - GFF2806 0.43 +0.8
512,730 - GFF2806 0.43 -1.9
512,730 - GFF2806 0.43 -0.2
512,730 - GFF2806 0.43 +0.6
512,730 - GFF2806 0.43 +0.3
512,826 - GFF2806 0.48 -0.6
512,917 - GFF2806 0.54 -0.2
513,008 + GFF2806 0.59 +0.2
513,008 + GFF2806 0.59 +0.3
513,008 + GFF2806 0.59 -1.6
513,008 + GFF2806 0.59 -0.5
513,009 - GFF2806 0.59 +0.6
513,009 - GFF2806 0.59 +0.4
513,009 - GFF2806 0.59 -1.3
513,080 + GFF2806 0.63 +0.2
513,080 + GFF2806 0.63 -0.2
513,080 + GFF2806 0.63 -0.4
513,080 + GFF2806 0.63 -0.9
513,081 - GFF2806 0.63 -0.2
513,167 + GFF2806 0.68 -0.7
513,167 + GFF2806 0.68 -1.2
513,830 - +0.5
513,878 - +0.1
513,963 - +0.1
514,028 + GFF2807 0.11 -2.0
514,031 + GFF2807 0.11 -0.6
514,031 + GFF2807 0.11 -0.4
514,031 + GFF2807 0.11 +0.5
514,032 - GFF2807 0.11 -0.1
514,032 - GFF2807 0.11 +0.5
514,283 + GFF2807 0.33 +0.9
514,284 - GFF2807 0.33 +0.4
514,295 + GFF2807 0.34 -0.5
514,295 + GFF2807 0.34 -0.4
514,295 + GFF2807 0.34 +0.1
514,344 - GFF2807 0.38 -0.7
514,436 + GFF2807 0.46 -0.0
514,437 - GFF2807 0.46 +0.2

Or see this region's nucleotide sequence