Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2784 and GFF2785 are separated by 11 nucleotides GFF2785 and GFF2786 overlap by 8 nucleotides GFF2786 and GFF2787 are separated by 115 nucleotides GFF2787 and GFF2788 overlap by 4 nucleotides
GFF2784 - Putative aliphatic sulfonates transport permease protein SsuC, at 487,231 to 487,962
GFF2784
GFF2785 - Nitrate import ATP-binding protein NrtD, at 487,974 to 488,807
GFF2785
GFF2786 - Allophanate hydrolase, at 488,800 to 490,176
GFF2786
GFF2787 - Nitrate import ATP-binding protein NrtD, at 490,292 to 491,167
GFF2787
GFF2788 - Taurine-binding periplasmic protein, at 491,164 to 492,180
GFF2788
Position (kb) 488
489
490
491 Strain fitness (log2 ratio) -2
-1
0
1 at 487.828 kb on + strand, within GFF2784 at 487.828 kb on + strand, within GFF2784 at 487.828 kb on + strand, within GFF2784 at 487.829 kb on - strand, within GFF2784 at 487.829 kb on - strand, within GFF2784 at 487.949 kb on + strand at 487.949 kb on + strand at 487.949 kb on + strand at 487.949 kb on + strand at 487.949 kb on + strand at 487.949 kb on + strand at 487.950 kb on - strand at 487.950 kb on - strand at 487.950 kb on - strand at 487.971 kb on + strand at 488.196 kb on + strand, within GFF2785 at 488.196 kb on + strand, within GFF2785 at 488.196 kb on + strand, within GFF2785 at 488.196 kb on + strand, within GFF2785 at 488.197 kb on - strand, within GFF2785 at 488.197 kb on - strand, within GFF2785 at 488.600 kb on + strand, within GFF2785 at 488.661 kb on - strand, within GFF2785 at 489.427 kb on + strand, within GFF2786 at 489.704 kb on - strand, within GFF2786 at 489.706 kb on + strand, within GFF2786 at 489.775 kb on + strand, within GFF2786 at 489.775 kb on + strand, within GFF2786 at 489.776 kb on - strand, within GFF2786 at 489.850 kb on + strand, within GFF2786 at 489.850 kb on + strand, within GFF2786 at 489.851 kb on - strand, within GFF2786 at 489.851 kb on - strand, within GFF2786 at 489.851 kb on - strand, within GFF2786 at 489.880 kb on + strand, within GFF2786 at 489.880 kb on + strand, within GFF2786 at 489.881 kb on - strand, within GFF2786 at 489.881 kb on - strand, within GFF2786 at 489.881 kb on - strand, within GFF2786 at 489.928 kb on + strand, within GFF2786 at 489.964 kb on + strand, within GFF2786 at 489.964 kb on + strand, within GFF2786 at 489.964 kb on + strand, within GFF2786 at 489.964 kb on + strand, within GFF2786 at 489.965 kb on - strand, within GFF2786 at 489.965 kb on - strand, within GFF2786 at 489.965 kb on - strand, within GFF2786 at 490.021 kb on + strand, within GFF2786 at 490.021 kb on + strand, within GFF2786 at 490.021 kb on + strand, within GFF2786 at 490.021 kb on + strand, within GFF2786 at 490.021 kb on + strand, within GFF2786 at 490.021 kb on + strand, within GFF2786 at 490.022 kb on - strand, within GFF2786 at 490.022 kb on - strand, within GFF2786 at 490.027 kb on + strand, within GFF2786 at 490.027 kb on + strand, within GFF2786 at 490.027 kb on + strand, within GFF2786 at 490.028 kb on - strand, within GFF2786 at 490.638 kb on + strand, within GFF2787 at 490.638 kb on + strand, within GFF2787 at 490.639 kb on - strand, within GFF2787 at 490.639 kb on - strand, within GFF2787 at 490.702 kb on - strand, within GFF2787 at 491.056 kb on - strand, within GFF2787 at 491.056 kb on - strand, within GFF2787 at 491.056 kb on - strand, within GFF2787
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 487,828 + GFF2784 0.82 +0.8 487,828 + GFF2784 0.82 -0.7 487,828 + GFF2784 0.82 +0.9 487,829 - GFF2784 0.82 +0.7 487,829 - GFF2784 0.82 -1.5 487,949 + +0.7 487,949 + -0.7 487,949 + -0.2 487,949 + +0.0 487,949 + +0.9 487,949 + -0.6 487,950 - +0.2 487,950 - -0.3 487,950 - +0.2 487,971 + +1.4 488,196 + GFF2785 0.27 -0.9 488,196 + GFF2785 0.27 +1.1 488,196 + GFF2785 0.27 +0.0 488,196 + GFF2785 0.27 -0.1 488,197 - GFF2785 0.27 -0.6 488,197 - GFF2785 0.27 -2.1 488,600 + GFF2785 0.75 -0.8 488,661 - GFF2785 0.82 -0.7 489,427 + GFF2786 0.46 -1.4 489,704 - GFF2786 0.66 +0.6 489,706 + GFF2786 0.66 -0.5 489,775 + GFF2786 0.71 +0.3 489,775 + GFF2786 0.71 -1.0 489,776 - GFF2786 0.71 -0.4 489,850 + GFF2786 0.76 -0.3 489,850 + GFF2786 0.76 -0.5 489,851 - GFF2786 0.76 +0.3 489,851 - GFF2786 0.76 +0.6 489,851 - GFF2786 0.76 -0.1 489,880 + GFF2786 0.78 -0.3 489,880 + GFF2786 0.78 -1.1 489,881 - GFF2786 0.79 +0.7 489,881 - GFF2786 0.79 -1.0 489,881 - GFF2786 0.79 -1.5 489,928 + GFF2786 0.82 -0.3 489,964 + GFF2786 0.85 -0.5 489,964 + GFF2786 0.85 +0.2 489,964 + GFF2786 0.85 +0.4 489,964 + GFF2786 0.85 +0.3 489,965 - GFF2786 0.85 +0.2 489,965 - GFF2786 0.85 -0.5 489,965 - GFF2786 0.85 +1.1 490,021 + GFF2786 0.89 -0.6 490,021 + GFF2786 0.89 -1.7 490,021 + GFF2786 0.89 -0.2 490,021 + GFF2786 0.89 -1.4 490,021 + GFF2786 0.89 -0.3 490,021 + GFF2786 0.89 +0.4 490,022 - GFF2786 0.89 +0.4 490,022 - GFF2786 0.89 -0.1 490,027 + GFF2786 0.89 -1.2 490,027 + GFF2786 0.89 -1.0 490,027 + GFF2786 0.89 +0.1 490,028 - GFF2786 0.89 -0.1 490,638 + GFF2787 0.39 -1.4 490,638 + GFF2787 0.39 -0.0 490,639 - GFF2787 0.40 -0.5 490,639 - GFF2787 0.40 +0.3 490,702 - GFF2787 0.47 -0.0 491,056 - GFF2787 0.87 +1.0 491,056 - GFF2787 0.87 -1.1 491,056 - GFF2787 0.87 -1.8
Or see this region's nucleotide sequence