Strain Fitness in Xanthobacter sp. DMC5 around GFF2762

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2760 and GFF2761 overlap by 13 nucleotidesGFF2761 and GFF2762 are separated by 6 nucleotidesGFF2762 and GFF2763 are separated by 84 nucleotides GFF2760 - Nitrate import ATP-binding protein NrtD, at 461,315 to 462,148 GFF2760 GFF2761 - Putative aliphatic sulfonates transport permease protein SsuC, at 462,136 to 462,900 GFF2761 GFF2762 - hypothetical protein, at 462,907 to 463,872 GFF2762 GFF2763 - 2,3-dimethylmalate lyase, at 463,957 to 464,826 GFF2763 Position (kb) 462 463 464Strain fitness (log2 ratio) -2 -1 0 1 2 3at 462.030 kb on + strand, within GFF2760at 462.167 kb on + strandat 462.167 kb on + strandat 462.227 kb on + strand, within GFF2761at 462.227 kb on + strand, within GFF2761at 462.227 kb on + strand, within GFF2761at 462.228 kb on - strand, within GFF2761at 462.228 kb on - strand, within GFF2761at 462.228 kb on - strand, within GFF2761at 462.383 kb on + strand, within GFF2761at 462.384 kb on - strand, within GFF2761at 462.384 kb on - strand, within GFF2761at 462.384 kb on - strand, within GFF2761at 462.384 kb on - strand, within GFF2761at 462.384 kb on - strand, within GFF2761at 462.395 kb on + strand, within GFF2761at 462.396 kb on - strand, within GFF2761at 462.396 kb on - strand, within GFF2761at 462.396 kb on - strand, within GFF2761at 462.419 kb on + strand, within GFF2761at 462.420 kb on - strand, within GFF2761at 462.420 kb on - strand, within GFF2761at 462.568 kb on + strand, within GFF2761at 462.568 kb on + strand, within GFF2761at 462.596 kb on + strand, within GFF2761at 462.596 kb on + strand, within GFF2761at 462.597 kb on - strand, within GFF2761at 462.624 kb on + strand, within GFF2761at 462.626 kb on + strand, within GFF2761at 462.626 kb on + strand, within GFF2761at 462.626 kb on + strand, within GFF2761at 462.627 kb on - strand, within GFF2761at 462.627 kb on - strand, within GFF2761at 462.720 kb on - strand, within GFF2761at 462.947 kb on + strandat 462.948 kb on - strandat 462.948 kb on - strandat 462.948 kb on - strandat 463.059 kb on + strand, within GFF2762at 463.060 kb on - strand, within GFF2762at 463.060 kb on - strand, within GFF2762at 463.148 kb on + strand, within GFF2762at 463.149 kb on - strand, within GFF2762at 463.149 kb on - strand, within GFF2762at 463.149 kb on - strand, within GFF2762at 463.164 kb on - strand, within GFF2762at 463.164 kb on - strand, within GFF2762at 463.164 kb on - strand, within GFF2762at 463.307 kb on + strand, within GFF2762at 463.307 kb on + strand, within GFF2762at 463.307 kb on + strand, within GFF2762at 463.308 kb on - strand, within GFF2762at 463.308 kb on - strand, within GFF2762at 463.308 kb on - strand, within GFF2762at 463.344 kb on - strand, within GFF2762at 463.488 kb on - strand, within GFF2762at 463.560 kb on + strand, within GFF2762at 463.560 kb on + strand, within GFF2762at 463.561 kb on - strand, within GFF2762at 463.676 kb on + strand, within GFF2762at 463.676 kb on + strand, within GFF2762at 463.710 kb on - strand, within GFF2762at 463.757 kb on + strand, within GFF2762at 463.757 kb on + strand, within GFF2762at 463.757 kb on + strand, within GFF2762at 463.757 kb on + strand, within GFF2762at 463.757 kb on + strand, within GFF2762at 463.758 kb on - strand, within GFF2762at 463.758 kb on - strand, within GFF2762at 463.758 kb on - strand, within GFF2762at 463.758 kb on - strand, within GFF2762at 463.758 kb on - strand, within GFF2762at 463.758 kb on - strand, within GFF2762at 463.849 kb on + strandat 463.850 kb on - strandat 464.096 kb on + strand, within GFF2763at 464.096 kb on + strand, within GFF2763at 464.096 kb on + strand, within GFF2763at 464.097 kb on - strand, within GFF2763at 464.097 kb on - strand, within GFF2763at 464.097 kb on - strand, within GFF2763at 464.097 kb on - strand, within GFF2763at 464.097 kb on - strand, within GFF2763at 464.135 kb on + strand, within GFF2763at 464.135 kb on + strand, within GFF2763at 464.136 kb on - strand, within GFF2763at 464.136 kb on - strand, within GFF2763at 464.136 kb on - strand, within GFF2763at 464.208 kb on + strand, within GFF2763at 464.209 kb on - strand, within GFF2763at 464.450 kb on + strand, within GFF2763at 464.685 kb on + strand, within GFF2763at 464.685 kb on + strand, within GFF2763at 464.685 kb on + strand, within GFF2763at 464.708 kb on + strand, within GFF2763at 464.708 kb on + strand, within GFF2763at 464.708 kb on + strand, within GFF2763at 464.708 kb on + strand, within GFF2763at 464.709 kb on - strand, within GFF2763at 464.709 kb on - strand, within GFF2763at 464.709 kb on - strand, within GFF2763at 464.709 kb on - strand, within GFF2763at 464.709 kb on - strand, within GFF2763at 464.709 kb on - strand, within GFF2763at 464.709 kb on - strand, within GFF2763at 464.865 kb on + strandat 464.865 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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462,030 + GFF2760 0.86 -1.1
462,167 + +0.2
462,167 + +0.7
462,227 + GFF2761 0.12 +0.3
462,227 + GFF2761 0.12 +0.1
462,227 + GFF2761 0.12 +0.2
462,228 - GFF2761 0.12 -0.0
462,228 - GFF2761 0.12 -0.3
462,228 - GFF2761 0.12 -1.0
462,383 + GFF2761 0.32 +0.6
462,384 - GFF2761 0.32 +0.3
462,384 - GFF2761 0.32 +0.1
462,384 - GFF2761 0.32 -0.1
462,384 - GFF2761 0.32 +0.3
462,384 - GFF2761 0.32 -1.5
462,395 + GFF2761 0.34 +0.4
462,396 - GFF2761 0.34 -0.2
462,396 - GFF2761 0.34 -0.7
462,396 - GFF2761 0.34 -0.5
462,419 + GFF2761 0.37 -1.0
462,420 - GFF2761 0.37 +0.1
462,420 - GFF2761 0.37 -0.6
462,568 + GFF2761 0.56 +0.3
462,568 + GFF2761 0.56 -1.1
462,596 + GFF2761 0.60 +1.0
462,596 + GFF2761 0.60 +0.5
462,597 - GFF2761 0.60 -1.5
462,624 + GFF2761 0.64 +0.4
462,626 + GFF2761 0.64 -0.2
462,626 + GFF2761 0.64 -0.2
462,626 + GFF2761 0.64 -0.2
462,627 - GFF2761 0.64 +0.3
462,627 - GFF2761 0.64 -0.4
462,720 - GFF2761 0.76 -0.2
462,947 + -0.7
462,948 - +0.0
462,948 - -0.8
462,948 - +0.8
463,059 + GFF2762 0.16 -0.1
463,060 - GFF2762 0.16 -0.5
463,060 - GFF2762 0.16 +0.3
463,148 + GFF2762 0.25 -0.6
463,149 - GFF2762 0.25 +0.4
463,149 - GFF2762 0.25 +0.6
463,149 - GFF2762 0.25 +0.2
463,164 - GFF2762 0.27 -0.1
463,164 - GFF2762 0.27 -1.5
463,164 - GFF2762 0.27 +0.1
463,307 + GFF2762 0.41 +0.3
463,307 + GFF2762 0.41 -0.5
463,307 + GFF2762 0.41 -1.3
463,308 - GFF2762 0.42 -0.3
463,308 - GFF2762 0.42 +0.3
463,308 - GFF2762 0.42 +0.5
463,344 - GFF2762 0.45 +0.1
463,488 - GFF2762 0.60 +0.2
463,560 + GFF2762 0.68 +0.9
463,560 + GFF2762 0.68 +0.0
463,561 - GFF2762 0.68 +0.1
463,676 + GFF2762 0.80 -0.9
463,676 + GFF2762 0.80 +0.3
463,710 - GFF2762 0.83 -0.7
463,757 + GFF2762 0.88 +0.3
463,757 + GFF2762 0.88 +0.6
463,757 + GFF2762 0.88 +1.0
463,757 + GFF2762 0.88 +2.8
463,757 + GFF2762 0.88 +0.4
463,758 - GFF2762 0.88 +1.3
463,758 - GFF2762 0.88 -1.0
463,758 - GFF2762 0.88 +0.5
463,758 - GFF2762 0.88 +0.0
463,758 - GFF2762 0.88 -0.2
463,758 - GFF2762 0.88 -0.7
463,849 + +0.3
463,850 - +0.3
464,096 + GFF2763 0.16 -0.5
464,096 + GFF2763 0.16 +0.5
464,096 + GFF2763 0.16 -0.4
464,097 - GFF2763 0.16 -1.0
464,097 - GFF2763 0.16 +1.5
464,097 - GFF2763 0.16 -0.5
464,097 - GFF2763 0.16 +0.6
464,097 - GFF2763 0.16 -0.2
464,135 + GFF2763 0.20 +0.4
464,135 + GFF2763 0.20 -0.2
464,136 - GFF2763 0.21 +0.6
464,136 - GFF2763 0.21 +0.1
464,136 - GFF2763 0.21 -0.2
464,208 + GFF2763 0.29 +0.2
464,209 - GFF2763 0.29 +0.1
464,450 + GFF2763 0.57 +1.6
464,685 + GFF2763 0.84 -0.1
464,685 + GFF2763 0.84 +0.4
464,685 + GFF2763 0.84 -0.3
464,708 + GFF2763 0.86 -1.1
464,708 + GFF2763 0.86 +0.5
464,708 + GFF2763 0.86 -0.3
464,708 + GFF2763 0.86 +0.1
464,709 - GFF2763 0.86 +0.0
464,709 - GFF2763 0.86 -0.7
464,709 - GFF2763 0.86 +0.0
464,709 - GFF2763 0.86 -0.4
464,709 - GFF2763 0.86 -0.7
464,709 - GFF2763 0.86 +0.4
464,709 - GFF2763 0.86 -0.5
464,865 + +0.7
464,865 + -1.9

Or see this region's nucleotide sequence