Strain Fitness in Xanthobacter sp. DMC5 around GFF2740

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2739 and GFF2740 are separated by 442 nucleotidesGFF2740 and GFF2741 are separated by 267 nucleotides GFF2739 - hypothetical protein, at 436,582 to 437,784 GFF2739 GFF2740 - Nucleoid occlusion factor SlmA, at 438,227 to 438,991 GFF2740 GFF2741 - Ferrichrome outer membrane transporter/phage receptor, at 439,259 to 441,319 GFF2741 Position (kb) 438 439Strain fitness (log2 ratio) -2 -1 0 1at 437.484 kb on + strand, within GFF2739at 437.495 kb on + strand, within GFF2739at 437.495 kb on + strand, within GFF2739at 437.495 kb on + strand, within GFF2739at 437.496 kb on - strand, within GFF2739at 437.496 kb on - strand, within GFF2739at 437.496 kb on - strand, within GFF2739at 437.496 kb on - strand, within GFF2739at 437.496 kb on - strand, within GFF2739at 437.496 kb on - strand, within GFF2739at 437.496 kb on - strand, within GFF2739at 437.496 kb on - strand, within GFF2739at 437.496 kb on - strand, within GFF2739at 437.534 kb on + strand, within GFF2739at 437.535 kb on - strand, within GFF2739at 437.565 kb on + strand, within GFF2739at 437.616 kb on + strand, within GFF2739at 437.616 kb on + strand, within GFF2739at 437.616 kb on + strand, within GFF2739at 437.617 kb on - strand, within GFF2739at 437.617 kb on - strand, within GFF2739at 437.617 kb on - strand, within GFF2739at 437.617 kb on - strand, within GFF2739at 437.618 kb on + strand, within GFF2739at 437.618 kb on + strand, within GFF2739at 437.618 kb on + strand, within GFF2739at 437.618 kb on + strand, within GFF2739at 437.619 kb on - strand, within GFF2739at 437.619 kb on - strand, within GFF2739at 437.619 kb on - strand, within GFF2739at 437.619 kb on - strand, within GFF2739at 437.637 kb on + strand, within GFF2739at 438.035 kb on - strandat 438.179 kb on + strandat 438.179 kb on + strandat 438.180 kb on - strandat 438.300 kb on + strandat 438.300 kb on + strandat 438.301 kb on - strandat 438.378 kb on + strand, within GFF2740at 438.378 kb on + strand, within GFF2740at 438.591 kb on + strand, within GFF2740at 438.591 kb on + strand, within GFF2740at 438.591 kb on + strand, within GFF2740at 438.592 kb on - strand, within GFF2740at 438.592 kb on - strand, within GFF2740at 438.708 kb on + strand, within GFF2740at 438.708 kb on + strand, within GFF2740at 438.717 kb on + strand, within GFF2740at 438.717 kb on + strand, within GFF2740at 438.717 kb on + strand, within GFF2740at 438.718 kb on - strand, within GFF2740at 438.983 kb on + strandat 439.220 kb on - strandat 439.389 kb on + strandat 439.389 kb on + strandat 439.389 kb on + strandat 439.389 kb on + strandat 439.390 kb on - strandat 439.390 kb on - strandat 439.393 kb on + strandat 439.448 kb on + strandat 439.448 kb on + strandat 439.448 kb on + strandat 439.448 kb on + strandat 439.448 kb on + strandat 439.449 kb on - strandat 439.502 kb on - strand, within GFF2741at 439.607 kb on + strand, within GFF2741at 439.655 kb on + strand, within GFF2741at 439.655 kb on + strand, within GFF2741at 439.687 kb on + strand, within GFF2741at 439.687 kb on + strand, within GFF2741at 439.687 kb on + strand, within GFF2741at 439.687 kb on + strand, within GFF2741at 439.688 kb on - strand, within GFF2741at 439.719 kb on - strand, within GFF2741at 439.719 kb on - strand, within GFF2741at 439.749 kb on - strand, within GFF2741at 439.749 kb on - strand, within GFF2741at 439.811 kb on + strand, within GFF2741at 439.811 kb on + strand, within GFF2741at 439.811 kb on + strand, within GFF2741at 439.811 kb on + strand, within GFF2741at 439.812 kb on - strand, within GFF2741at 439.812 kb on - strand, within GFF2741at 439.812 kb on - strand, within GFF2741at 439.850 kb on + strand, within GFF2741at 439.850 kb on + strand, within GFF2741at 439.850 kb on + strand, within GFF2741at 439.850 kb on + strand, within GFF2741at 439.851 kb on - strand, within GFF2741at 439.851 kb on - strand, within GFF2741at 439.851 kb on - strand, within GFF2741at 439.965 kb on - strand, within GFF2741

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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437,484 + GFF2739 0.75 -0.1
437,495 + GFF2739 0.76 +0.3
437,495 + GFF2739 0.76 +0.3
437,495 + GFF2739 0.76 +0.5
437,496 - GFF2739 0.76 +0.0
437,496 - GFF2739 0.76 -0.0
437,496 - GFF2739 0.76 +1.0
437,496 - GFF2739 0.76 +0.0
437,496 - GFF2739 0.76 +0.5
437,496 - GFF2739 0.76 +0.1
437,496 - GFF2739 0.76 +1.2
437,496 - GFF2739 0.76 -1.0
437,496 - GFF2739 0.76 -0.1
437,534 + GFF2739 0.79 +0.0
437,535 - GFF2739 0.79 -0.1
437,565 + GFF2739 0.82 +0.5
437,616 + GFF2739 0.86 +0.7
437,616 + GFF2739 0.86 -0.4
437,616 + GFF2739 0.86 -1.5
437,617 - GFF2739 0.86 -0.0
437,617 - GFF2739 0.86 +0.2
437,617 - GFF2739 0.86 +0.8
437,617 - GFF2739 0.86 +0.4
437,618 + GFF2739 0.86 +0.0
437,618 + GFF2739 0.86 -1.0
437,618 + GFF2739 0.86 +0.1
437,618 + GFF2739 0.86 +0.6
437,619 - GFF2739 0.86 -0.1
437,619 - GFF2739 0.86 +0.8
437,619 - GFF2739 0.86 -0.9
437,619 - GFF2739 0.86 +0.8
437,637 + GFF2739 0.88 -0.2
438,035 - +0.2
438,179 + -0.1
438,179 + -1.2
438,180 - -2.0
438,300 + +0.6
438,300 + -0.3
438,301 - +0.0
438,378 + GFF2740 0.20 +0.5
438,378 + GFF2740 0.20 +0.7
438,591 + GFF2740 0.48 +0.1
438,591 + GFF2740 0.48 -0.0
438,591 + GFF2740 0.48 +0.3
438,592 - GFF2740 0.48 +0.4
438,592 - GFF2740 0.48 -0.1
438,708 + GFF2740 0.63 -0.1
438,708 + GFF2740 0.63 -0.5
438,717 + GFF2740 0.64 -0.1
438,717 + GFF2740 0.64 +0.4
438,717 + GFF2740 0.64 -0.9
438,718 - GFF2740 0.64 +0.4
438,983 + +0.3
439,220 - -0.8
439,389 + -0.2
439,389 + +1.2
439,389 + +0.3
439,389 + +0.3
439,390 - -0.8
439,390 - +0.0
439,393 + +0.2
439,448 + +0.8
439,448 + -0.4
439,448 + -0.9
439,448 + -0.4
439,448 + +0.0
439,449 - +0.7
439,502 - GFF2741 0.12 -0.9
439,607 + GFF2741 0.17 +0.2
439,655 + GFF2741 0.19 +0.7
439,655 + GFF2741 0.19 +0.0
439,687 + GFF2741 0.21 -0.4
439,687 + GFF2741 0.21 +0.4
439,687 + GFF2741 0.21 -0.4
439,687 + GFF2741 0.21 -0.1
439,688 - GFF2741 0.21 +0.1
439,719 - GFF2741 0.22 -0.7
439,719 - GFF2741 0.22 -0.5
439,749 - GFF2741 0.24 +0.5
439,749 - GFF2741 0.24 +0.5
439,811 + GFF2741 0.27 -1.7
439,811 + GFF2741 0.27 -0.6
439,811 + GFF2741 0.27 -0.1
439,811 + GFF2741 0.27 +0.8
439,812 - GFF2741 0.27 -1.1
439,812 - GFF2741 0.27 -0.5
439,812 - GFF2741 0.27 -0.4
439,850 + GFF2741 0.29 -0.2
439,850 + GFF2741 0.29 -0.4
439,850 + GFF2741 0.29 -1.0
439,850 + GFF2741 0.29 -0.4
439,851 - GFF2741 0.29 -0.8
439,851 - GFF2741 0.29 -1.6
439,851 - GFF2741 0.29 -0.8
439,965 - GFF2741 0.34 +1.1

Or see this region's nucleotide sequence