Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2730 and GFF2731 overlap by 140 nucleotides GFF2731 and GFF2732 are separated by 571 nucleotides
GFF2730 - Enamidase, at 422,859 to 424,064
GFF2730
GFF2731 - hypothetical protein, at 423,925 to 425,160
GFF2731
GFF2732 - hypothetical protein, at 425,732 to 427,702
GFF2732
Position (kb) 423
424
425
426 Strain fitness (log2 ratio) -2
-1
0
1 at 422.960 kb on + strand at 422.960 kb on + strand at 422.961 kb on - strand at 423.424 kb on + strand, within GFF2730 at 423.441 kb on + strand, within GFF2730 at 423.442 kb on - strand, within GFF2730 at 423.459 kb on - strand, within GFF2730 at 423.625 kb on + strand, within GFF2730 at 423.625 kb on + strand, within GFF2730 at 423.625 kb on + strand, within GFF2730 at 423.625 kb on + strand, within GFF2730 at 423.625 kb on + strand, within GFF2730 at 423.626 kb on - strand, within GFF2730 at 423.626 kb on - strand, within GFF2730 at 423.629 kb on + strand, within GFF2730 at 423.629 kb on + strand, within GFF2730 at 423.629 kb on + strand, within GFF2730 at 423.630 kb on - strand, within GFF2730 at 423.935 kb on + strand at 423.935 kb on + strand at 423.935 kb on + strand at 423.935 kb on + strand at 423.935 kb on + strand at 423.935 kb on + strand at 423.936 kb on - strand at 423.936 kb on - strand at 423.936 kb on - strand at 423.936 kb on - strand at 424.082 kb on + strand, within GFF2731 at 424.082 kb on + strand, within GFF2731 at 424.082 kb on + strand, within GFF2731 at 424.082 kb on + strand, within GFF2731 at 424.082 kb on + strand, within GFF2731 at 424.082 kb on + strand, within GFF2731 at 424.082 kb on + strand, within GFF2731 at 424.082 kb on + strand, within GFF2731 at 424.082 kb on + strand, within GFF2731 at 424.082 kb on + strand, within GFF2731 at 424.082 kb on + strand, within GFF2731 at 424.083 kb on - strand, within GFF2731 at 424.083 kb on - strand, within GFF2731 at 424.083 kb on - strand, within GFF2731 at 424.083 kb on - strand, within GFF2731 at 424.083 kb on - strand, within GFF2731 at 424.083 kb on - strand, within GFF2731 at 424.083 kb on - strand, within GFF2731 at 424.161 kb on + strand, within GFF2731 at 424.161 kb on + strand, within GFF2731 at 424.161 kb on + strand, within GFF2731 at 424.162 kb on - strand, within GFF2731 at 424.162 kb on - strand, within GFF2731 at 424.233 kb on + strand, within GFF2731 at 424.233 kb on + strand, within GFF2731 at 424.234 kb on - strand, within GFF2731 at 424.296 kb on + strand, within GFF2731 at 424.296 kb on + strand, within GFF2731 at 424.327 kb on - strand, within GFF2731 at 424.350 kb on - strand, within GFF2731 at 424.351 kb on + strand, within GFF2731 at 424.352 kb on - strand, within GFF2731 at 424.352 kb on - strand, within GFF2731 at 424.354 kb on - strand, within GFF2731 at 424.415 kb on + strand, within GFF2731 at 424.415 kb on + strand, within GFF2731 at 424.416 kb on - strand, within GFF2731 at 424.416 kb on - strand, within GFF2731 at 424.416 kb on - strand, within GFF2731 at 424.559 kb on + strand, within GFF2731 at 424.559 kb on + strand, within GFF2731 at 424.559 kb on + strand, within GFF2731 at 424.559 kb on + strand, within GFF2731 at 424.559 kb on + strand, within GFF2731 at 424.560 kb on - strand, within GFF2731 at 424.560 kb on - strand, within GFF2731 at 424.560 kb on - strand, within GFF2731 at 424.750 kb on + strand, within GFF2731 at 424.752 kb on + strand, within GFF2731 at 424.752 kb on + strand, within GFF2731 at 424.752 kb on + strand, within GFF2731 at 424.752 kb on + strand, within GFF2731 at 424.752 kb on + strand, within GFF2731 at 424.753 kb on - strand, within GFF2731 at 424.753 kb on - strand, within GFF2731 at 424.850 kb on + strand, within GFF2731 at 424.850 kb on + strand, within GFF2731 at 424.850 kb on + strand, within GFF2731 at 424.850 kb on + strand, within GFF2731 at 424.851 kb on - strand, within GFF2731 at 424.851 kb on - strand, within GFF2731 at 425.039 kb on + strand at 425.039 kb on + strand at 425.039 kb on + strand at 425.039 kb on + strand at 425.039 kb on + strand at 425.040 kb on - strand at 425.040 kb on - strand at 425.040 kb on - strand at 425.040 kb on - strand at 425.040 kb on - strand at 425.105 kb on + strand at 425.105 kb on + strand at 425.105 kb on + strand at 425.106 kb on - strand at 425.106 kb on - strand at 425.106 kb on - strand at 425.106 kb on - strand at 425.155 kb on - strand at 425.195 kb on - strand at 425.205 kb on + strand at 425.206 kb on - strand at 425.262 kb on - strand at 425.284 kb on + strand at 425.287 kb on + strand at 425.333 kb on - strand at 425.333 kb on - strand at 425.336 kb on - strand at 425.336 kb on - strand at 425.336 kb on - strand at 425.388 kb on + strand at 425.388 kb on + strand at 425.389 kb on - strand at 425.389 kb on - strand at 425.389 kb on - strand at 425.450 kb on - strand at 425.504 kb on + strand at 425.505 kb on - strand at 425.505 kb on - strand at 425.513 kb on + strand at 425.534 kb on + strand at 425.534 kb on + strand at 425.534 kb on + strand at 425.534 kb on + strand at 425.535 kb on - strand at 425.535 kb on - strand at 425.535 kb on - strand at 425.535 kb on - strand at 425.535 kb on - strand at 425.535 kb on - strand at 425.535 kb on - strand at 425.733 kb on + strand at 425.734 kb on - strand at 425.734 kb on - strand at 425.734 kb on - strand at 425.734 kb on - strand at 425.734 kb on - strand at 425.734 kb on - strand at 425.734 kb on - strand at 425.734 kb on - strand at 425.735 kb on + strand at 425.735 kb on + strand at 425.736 kb on - strand at 425.736 kb on - strand at 425.736 kb on - strand at 425.803 kb on + strand at 425.803 kb on + strand at 425.903 kb on + strand at 425.904 kb on - strand at 426.101 kb on + strand, within GFF2732 at 426.102 kb on - strand, within GFF2732 at 426.102 kb on - strand, within GFF2732 at 426.137 kb on + strand, within GFF2732 at 426.137 kb on + strand, within GFF2732 at 426.137 kb on + strand, within GFF2732
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 422,960 + -0.2 422,960 + -0.7 422,961 - -1.3 423,424 + GFF2730 0.47 +0.2 423,441 + GFF2730 0.48 +0.7 423,442 - GFF2730 0.48 +0.7 423,459 - GFF2730 0.50 -0.2 423,625 + GFF2730 0.64 -0.4 423,625 + GFF2730 0.64 -0.1 423,625 + GFF2730 0.64 -0.7 423,625 + GFF2730 0.64 -0.0 423,625 + GFF2730 0.64 +0.2 423,626 - GFF2730 0.64 -0.1 423,626 - GFF2730 0.64 -0.5 423,629 + GFF2730 0.64 +0.1 423,629 + GFF2730 0.64 -0.5 423,629 + GFF2730 0.64 +0.9 423,630 - GFF2730 0.64 -1.2 423,935 + +0.9 423,935 + +0.8 423,935 + +0.5 423,935 + -0.7 423,935 + -0.8 423,935 + -1.1 423,936 - +0.1 423,936 - +0.3 423,936 - -0.6 423,936 - +0.7 424,082 + GFF2731 0.13 -1.1 424,082 + GFF2731 0.13 -0.2 424,082 + GFF2731 0.13 +0.9 424,082 + GFF2731 0.13 -0.2 424,082 + GFF2731 0.13 -1.4 424,082 + GFF2731 0.13 -1.5 424,082 + GFF2731 0.13 -0.5 424,082 + GFF2731 0.13 +0.9 424,082 + GFF2731 0.13 -0.6 424,082 + GFF2731 0.13 +0.1 424,082 + GFF2731 0.13 +0.1 424,083 - GFF2731 0.13 -0.4 424,083 - GFF2731 0.13 -0.3 424,083 - GFF2731 0.13 +0.6 424,083 - GFF2731 0.13 -1.4 424,083 - GFF2731 0.13 +0.1 424,083 - GFF2731 0.13 -1.8 424,083 - GFF2731 0.13 -1.0 424,161 + GFF2731 0.19 -0.1 424,161 + GFF2731 0.19 +0.1 424,161 + GFF2731 0.19 -0.2 424,162 - GFF2731 0.19 -2.3 424,162 - GFF2731 0.19 -1.3 424,233 + GFF2731 0.25 -0.2 424,233 + GFF2731 0.25 -0.4 424,234 - GFF2731 0.25 +0.5 424,296 + GFF2731 0.30 -0.1 424,296 + GFF2731 0.30 +1.1 424,327 - GFF2731 0.33 -0.4 424,350 - GFF2731 0.34 +0.1 424,351 + GFF2731 0.34 -0.2 424,352 - GFF2731 0.35 -0.5 424,352 - GFF2731 0.35 -0.2 424,354 - GFF2731 0.35 +0.7 424,415 + GFF2731 0.40 -1.4 424,415 + GFF2731 0.40 -0.8 424,416 - GFF2731 0.40 +0.4 424,416 - GFF2731 0.40 +0.7 424,416 - GFF2731 0.40 -0.6 424,559 + GFF2731 0.51 -0.6 424,559 + GFF2731 0.51 -0.2 424,559 + GFF2731 0.51 -0.2 424,559 + GFF2731 0.51 +0.6 424,559 + GFF2731 0.51 -0.8 424,560 - GFF2731 0.51 +0.0 424,560 - GFF2731 0.51 +0.2 424,560 - GFF2731 0.51 -0.0 424,750 + GFF2731 0.67 -0.1 424,752 + GFF2731 0.67 +0.3 424,752 + GFF2731 0.67 -0.6 424,752 + GFF2731 0.67 +0.5 424,752 + GFF2731 0.67 +0.3 424,752 + GFF2731 0.67 +1.0 424,753 - GFF2731 0.67 +0.4 424,753 - GFF2731 0.67 -0.2 424,850 + GFF2731 0.75 -0.9 424,850 + GFF2731 0.75 +0.8 424,850 + GFF2731 0.75 -0.7 424,850 + GFF2731 0.75 -0.3 424,851 - GFF2731 0.75 +0.8 424,851 - GFF2731 0.75 +0.7 425,039 + -0.8 425,039 + +0.3 425,039 + +0.9 425,039 + +0.6 425,039 + -0.9 425,040 - +0.9 425,040 - -0.2 425,040 - -0.7 425,040 - -0.8 425,040 - +0.0 425,105 + +0.1 425,105 + -0.2 425,105 + -0.1 425,106 - -0.9 425,106 - -0.9 425,106 - -1.2 425,106 - +0.3 425,155 - -0.2 425,195 - -0.8 425,205 + -0.4 425,206 - -0.1 425,262 - +0.1 425,284 + +0.0 425,287 + -0.5 425,333 - +0.4 425,333 - -0.0 425,336 - +0.1 425,336 - -0.5 425,336 - -0.9 425,388 + +0.3 425,388 + +0.4 425,389 - +1.0 425,389 - -1.2 425,389 - -0.5 425,450 - +0.3 425,504 + +0.0 425,505 - +0.1 425,505 - +1.0 425,513 + -1.0 425,534 + +0.0 425,534 + -0.2 425,534 + +0.2 425,534 + +0.2 425,535 - +0.1 425,535 - -0.2 425,535 - +0.2 425,535 - -0.1 425,535 - -1.1 425,535 - +0.7 425,535 - -0.2 425,733 + +0.7 425,734 - +0.6 425,734 - -1.1 425,734 - +0.5 425,734 - +0.0 425,734 - -0.8 425,734 - +0.1 425,734 - -0.8 425,734 - -0.4 425,735 + +0.1 425,735 + +0.3 425,736 - +0.3 425,736 - -0.0 425,736 - +0.1 425,803 + -0.4 425,803 + +0.2 425,903 + +0.3 425,904 - -1.3 426,101 + GFF2732 0.19 -0.7 426,102 - GFF2732 0.19 +1.7 426,102 - GFF2732 0.19 -0.9 426,137 + GFF2732 0.21 -1.4 426,137 + GFF2732 0.21 -0.1 426,137 + GFF2732 0.21 +0.7
Or see this region's nucleotide sequence