Strain Fitness in Xanthobacter sp. DMC5 around GFF2719

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2717 and GFF2718 are separated by 68 nucleotidesGFF2718 and GFF2719 are separated by 44 nucleotidesGFF2719 and GFF2720 are separated by 30 nucleotides GFF2717 - NADPH dehydrogenase, at 410,742 to 411,854 GFF2717 GFF2718 - hypothetical protein, at 411,923 to 412,318 GFF2718 GFF2719 - hypothetical protein, at 412,363 to 413,178 GFF2719 GFF2720 - 6-hydroxynicotinate 3-monooxygenase, at 413,209 to 414,366 GFF2720 Position (kb) 412 413 414Strain fitness (log2 ratio) -2 -1 0 1 2at 411.415 kb on - strand, within GFF2717at 411.580 kb on + strand, within GFF2717at 411.581 kb on - strand, within GFF2717at 411.740 kb on + strand, within GFF2717at 411.740 kb on + strand, within GFF2717at 411.740 kb on + strand, within GFF2717at 411.740 kb on + strand, within GFF2717at 411.741 kb on - strand, within GFF2717at 411.741 kb on - strand, within GFF2717at 411.741 kb on - strand, within GFF2717at 411.741 kb on - strand, within GFF2717at 411.954 kb on + strandat 411.954 kb on + strandat 411.954 kb on + strandat 411.977 kb on - strand, within GFF2718at 411.977 kb on - strand, within GFF2718at 412.095 kb on + strand, within GFF2718at 412.095 kb on + strand, within GFF2718at 412.095 kb on + strand, within GFF2718at 412.095 kb on + strand, within GFF2718at 412.095 kb on + strand, within GFF2718at 412.096 kb on - strand, within GFF2718at 412.167 kb on + strand, within GFF2718at 412.167 kb on + strand, within GFF2718at 412.168 kb on - strand, within GFF2718at 412.168 kb on - strand, within GFF2718at 412.168 kb on - strand, within GFF2718at 412.263 kb on + strand, within GFF2718at 412.264 kb on - strand, within GFF2718at 412.295 kb on + strandat 412.295 kb on + strandat 412.295 kb on + strandat 412.295 kb on + strandat 412.295 kb on + strandat 412.296 kb on - strandat 412.296 kb on - strandat 412.296 kb on - strandat 412.296 kb on - strandat 412.314 kb on + strandat 412.463 kb on + strand, within GFF2719at 412.463 kb on + strand, within GFF2719at 412.463 kb on + strand, within GFF2719at 412.463 kb on + strand, within GFF2719at 412.463 kb on + strand, within GFF2719at 412.464 kb on - strand, within GFF2719at 412.464 kb on - strand, within GFF2719at 412.475 kb on + strand, within GFF2719at 412.475 kb on + strand, within GFF2719at 412.476 kb on - strand, within GFF2719at 412.476 kb on - strand, within GFF2719at 412.476 kb on - strand, within GFF2719at 412.476 kb on - strand, within GFF2719at 412.476 kb on - strand, within GFF2719at 412.544 kb on + strand, within GFF2719at 412.544 kb on + strand, within GFF2719at 412.545 kb on - strand, within GFF2719at 412.579 kb on + strand, within GFF2719at 412.778 kb on + strand, within GFF2719at 412.779 kb on - strand, within GFF2719at 412.779 kb on - strand, within GFF2719at 412.826 kb on + strand, within GFF2719at 412.826 kb on + strand, within GFF2719at 412.826 kb on + strand, within GFF2719at 412.827 kb on - strand, within GFF2719at 412.827 kb on - strand, within GFF2719at 412.827 kb on - strand, within GFF2719at 412.829 kb on + strand, within GFF2719at 412.830 kb on - strand, within GFF2719at 412.881 kb on + strand, within GFF2719at 412.882 kb on - strand, within GFF2719at 412.882 kb on - strand, within GFF2719at 412.882 kb on - strand, within GFF2719at 412.883 kb on + strand, within GFF2719at 412.883 kb on + strand, within GFF2719at 412.909 kb on + strand, within GFF2719at 412.909 kb on + strand, within GFF2719at 412.909 kb on + strand, within GFF2719at 412.909 kb on + strand, within GFF2719at 412.909 kb on + strand, within GFF2719at 412.909 kb on + strand, within GFF2719at 412.910 kb on - strand, within GFF2719at 412.910 kb on - strand, within GFF2719at 412.910 kb on - strand, within GFF2719at 412.910 kb on - strand, within GFF2719at 412.910 kb on - strand, within GFF2719at 412.910 kb on - strand, within GFF2719at 413.141 kb on + strandat 413.141 kb on + strandat 413.141 kb on + strandat 413.142 kb on - strandat 413.142 kb on - strandat 413.142 kb on - strandat 413.142 kb on - strandat 413.267 kb on + strandat 413.267 kb on + strandat 413.267 kb on + strandat 413.292 kb on + strandat 413.292 kb on + strandat 413.293 kb on - strandat 413.366 kb on + strand, within GFF2720at 413.366 kb on + strand, within GFF2720at 413.366 kb on + strand, within GFF2720at 413.466 kb on + strand, within GFF2720at 413.466 kb on + strand, within GFF2720at 413.466 kb on + strand, within GFF2720at 413.466 kb on + strand, within GFF2720at 413.466 kb on + strand, within GFF2720at 413.466 kb on + strand, within GFF2720at 413.467 kb on - strand, within GFF2720at 413.467 kb on - strand, within GFF2720at 413.467 kb on - strand, within GFF2720at 413.467 kb on - strand, within GFF2720at 413.467 kb on - strand, within GFF2720at 413.468 kb on + strand, within GFF2720at 413.468 kb on + strand, within GFF2720at 413.469 kb on - strand, within GFF2720at 413.469 kb on - strand, within GFF2720at 413.469 kb on - strand, within GFF2720at 413.469 kb on - strand, within GFF2720at 413.606 kb on + strand, within GFF2720at 413.607 kb on - strand, within GFF2720at 413.699 kb on + strand, within GFF2720at 413.699 kb on + strand, within GFF2720at 413.699 kb on + strand, within GFF2720at 413.699 kb on + strand, within GFF2720at 413.699 kb on + strand, within GFF2720at 413.700 kb on - strand, within GFF2720at 413.700 kb on - strand, within GFF2720at 413.700 kb on - strand, within GFF2720at 413.700 kb on - strand, within GFF2720at 413.700 kb on - strand, within GFF2720at 413.726 kb on + strand, within GFF2720at 413.726 kb on + strand, within GFF2720at 413.727 kb on - strand, within GFF2720at 413.727 kb on - strand, within GFF2720at 413.730 kb on - strand, within GFF2720at 413.730 kb on - strand, within GFF2720at 413.739 kb on + strand, within GFF2720at 413.739 kb on + strand, within GFF2720at 413.740 kb on - strand, within GFF2720at 413.864 kb on + strand, within GFF2720at 413.864 kb on + strand, within GFF2720at 413.864 kb on + strand, within GFF2720at 413.864 kb on + strand, within GFF2720at 413.864 kb on + strand, within GFF2720at 413.865 kb on - strand, within GFF2720at 413.865 kb on - strand, within GFF2720at 413.865 kb on - strand, within GFF2720at 413.865 kb on - strand, within GFF2720at 413.865 kb on - strand, within GFF2720at 414.059 kb on + strand, within GFF2720at 414.060 kb on - strand, within GFF2720at 414.060 kb on - strand, within GFF2720at 414.060 kb on - strand, within GFF2720at 414.060 kb on - strand, within GFF2720

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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411,415 - GFF2717 0.60 -1.8
411,580 + GFF2717 0.75 +0.7
411,581 - GFF2717 0.75 -2.1
411,740 + GFF2717 0.90 +0.3
411,740 + GFF2717 0.90 +0.4
411,740 + GFF2717 0.90 +0.5
411,740 + GFF2717 0.90 -0.3
411,741 - GFF2717 0.90 -0.0
411,741 - GFF2717 0.90 -1.3
411,741 - GFF2717 0.90 +0.4
411,741 - GFF2717 0.90 +1.0
411,954 + +0.9
411,954 + -0.1
411,954 + -0.3
411,977 - GFF2718 0.14 +1.1
411,977 - GFF2718 0.14 -0.2
412,095 + GFF2718 0.43 -0.7
412,095 + GFF2718 0.43 -0.2
412,095 + GFF2718 0.43 +0.1
412,095 + GFF2718 0.43 -1.2
412,095 + GFF2718 0.43 +0.1
412,096 - GFF2718 0.44 -2.3
412,167 + GFF2718 0.62 +0.3
412,167 + GFF2718 0.62 +0.1
412,168 - GFF2718 0.62 -0.0
412,168 - GFF2718 0.62 -0.7
412,168 - GFF2718 0.62 +1.2
412,263 + GFF2718 0.86 +0.5
412,264 - GFF2718 0.86 +0.7
412,295 + -1.3
412,295 + +0.0
412,295 + +0.1
412,295 + -0.3
412,295 + -0.7
412,296 - -1.1
412,296 - +0.4
412,296 - +0.6
412,296 - -0.4
412,314 + -0.7
412,463 + GFF2719 0.12 +1.9
412,463 + GFF2719 0.12 -1.1
412,463 + GFF2719 0.12 -1.8
412,463 + GFF2719 0.12 +0.3
412,463 + GFF2719 0.12 +0.2
412,464 - GFF2719 0.12 +0.8
412,464 - GFF2719 0.12 +0.3
412,475 + GFF2719 0.14 +0.3
412,475 + GFF2719 0.14 +0.1
412,476 - GFF2719 0.14 +0.3
412,476 - GFF2719 0.14 +0.4
412,476 - GFF2719 0.14 +1.0
412,476 - GFF2719 0.14 -0.9
412,476 - GFF2719 0.14 +0.3
412,544 + GFF2719 0.22 -0.7
412,544 + GFF2719 0.22 +0.0
412,545 - GFF2719 0.22 +0.7
412,579 + GFF2719 0.26 +0.2
412,778 + GFF2719 0.51 +0.4
412,779 - GFF2719 0.51 +0.2
412,779 - GFF2719 0.51 +0.4
412,826 + GFF2719 0.57 +0.9
412,826 + GFF2719 0.57 +0.3
412,826 + GFF2719 0.57 +0.1
412,827 - GFF2719 0.57 -0.4
412,827 - GFF2719 0.57 +0.1
412,827 - GFF2719 0.57 +0.3
412,829 + GFF2719 0.57 +0.5
412,830 - GFF2719 0.57 +0.3
412,881 + GFF2719 0.63 +1.2
412,882 - GFF2719 0.64 +0.5
412,882 - GFF2719 0.64 -0.7
412,882 - GFF2719 0.64 -0.1
412,883 + GFF2719 0.64 -0.4
412,883 + GFF2719 0.64 +0.2
412,909 + GFF2719 0.67 +0.4
412,909 + GFF2719 0.67 +1.3
412,909 + GFF2719 0.67 +1.1
412,909 + GFF2719 0.67 -0.6
412,909 + GFF2719 0.67 +0.6
412,909 + GFF2719 0.67 -1.9
412,910 - GFF2719 0.67 -0.1
412,910 - GFF2719 0.67 -0.3
412,910 - GFF2719 0.67 +0.0
412,910 - GFF2719 0.67 -0.8
412,910 - GFF2719 0.67 -0.9
412,910 - GFF2719 0.67 +0.7
413,141 + -2.4
413,141 + -0.7
413,141 + +1.0
413,142 - -0.6
413,142 - +0.1
413,142 - -0.1
413,142 - +0.6
413,267 + -0.3
413,267 + +0.4
413,267 + +0.3
413,292 + -0.2
413,292 + +0.6
413,293 - -0.3
413,366 + GFF2720 0.14 -1.6
413,366 + GFF2720 0.14 -0.6
413,366 + GFF2720 0.14 +0.2
413,466 + GFF2720 0.22 +0.7
413,466 + GFF2720 0.22 +0.1
413,466 + GFF2720 0.22 -0.1
413,466 + GFF2720 0.22 -0.2
413,466 + GFF2720 0.22 +1.3
413,466 + GFF2720 0.22 +0.3
413,467 - GFF2720 0.22 -0.0
413,467 - GFF2720 0.22 +2.1
413,467 - GFF2720 0.22 +0.0
413,467 - GFF2720 0.22 -0.7
413,467 - GFF2720 0.22 -0.3
413,468 + GFF2720 0.22 -0.9
413,468 + GFF2720 0.22 +0.7
413,469 - GFF2720 0.22 +0.3
413,469 - GFF2720 0.22 +0.3
413,469 - GFF2720 0.22 -0.5
413,469 - GFF2720 0.22 -0.7
413,606 + GFF2720 0.34 +1.0
413,607 - GFF2720 0.34 -0.3
413,699 + GFF2720 0.42 -0.6
413,699 + GFF2720 0.42 +0.3
413,699 + GFF2720 0.42 -0.4
413,699 + GFF2720 0.42 -0.8
413,699 + GFF2720 0.42 +0.7
413,700 - GFF2720 0.42 +0.2
413,700 - GFF2720 0.42 +0.1
413,700 - GFF2720 0.42 -0.1
413,700 - GFF2720 0.42 +0.5
413,700 - GFF2720 0.42 +0.7
413,726 + GFF2720 0.45 +0.3
413,726 + GFF2720 0.45 +0.2
413,727 - GFF2720 0.45 -0.1
413,727 - GFF2720 0.45 -0.7
413,730 - GFF2720 0.45 +0.3
413,730 - GFF2720 0.45 +0.2
413,739 + GFF2720 0.46 -1.5
413,739 + GFF2720 0.46 -0.6
413,740 - GFF2720 0.46 +1.3
413,864 + GFF2720 0.57 +0.2
413,864 + GFF2720 0.57 -0.0
413,864 + GFF2720 0.57 +0.1
413,864 + GFF2720 0.57 +0.4
413,864 + GFF2720 0.57 +0.2
413,865 - GFF2720 0.57 -0.9
413,865 - GFF2720 0.57 +0.3
413,865 - GFF2720 0.57 -0.2
413,865 - GFF2720 0.57 -1.3
413,865 - GFF2720 0.57 +0.7
414,059 + GFF2720 0.73 +0.7
414,060 - GFF2720 0.73 -0.7
414,060 - GFF2720 0.73 -0.4
414,060 - GFF2720 0.73 +0.2
414,060 - GFF2720 0.73 -0.8

Or see this region's nucleotide sequence