Strain Fitness in Xanthobacter sp. DMC5 around GFF2717

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2715 and GFF2716 are separated by 398 nucleotidesGFF2716 and GFF2717 are separated by 329 nucleotidesGFF2717 and GFF2718 are separated by 68 nucleotidesGFF2718 and GFF2719 are separated by 44 nucleotides GFF2715 - hypothetical protein, at 406,565 to 409,915 GFF2715 GFF2716 - hypothetical protein, at 410,314 to 410,412 GFF2716 GFF2717 - NADPH dehydrogenase, at 410,742 to 411,854 GFF2717 GFF2718 - hypothetical protein, at 411,923 to 412,318 GFF2718 GFF2719 - hypothetical protein, at 412,363 to 413,178 GFF2719 Position (kb) 410 411 412Strain fitness (log2 ratio) -2 -1 0 1 2at 409.823 kb on + strandat 409.824 kb on - strandat 409.866 kb on + strandat 409.866 kb on + strandat 409.866 kb on + strandat 409.866 kb on + strandat 409.867 kb on - strandat 409.945 kb on + strandat 409.946 kb on - strandat 410.086 kb on - strandat 410.086 kb on - strandat 410.098 kb on + strandat 410.098 kb on + strandat 410.098 kb on + strandat 410.101 kb on + strandat 410.102 kb on - strandat 410.102 kb on - strandat 410.149 kb on + strandat 410.150 kb on - strandat 410.175 kb on + strandat 410.175 kb on + strandat 410.176 kb on - strandat 410.265 kb on + strandat 410.386 kb on + strand, within GFF2716at 410.387 kb on - strand, within GFF2716at 410.587 kb on + strandat 410.587 kb on + strandat 410.587 kb on + strandat 410.587 kb on + strandat 410.587 kb on + strandat 410.588 kb on - strandat 410.588 kb on - strandat 410.588 kb on - strandat 410.588 kb on - strandat 410.588 kb on - strandat 410.588 kb on - strandat 410.598 kb on + strandat 410.599 kb on - strandat 410.699 kb on + strandat 410.743 kb on + strandat 410.743 kb on + strandat 410.807 kb on - strandat 410.823 kb on + strandat 410.872 kb on + strand, within GFF2717at 410.872 kb on + strand, within GFF2717at 410.873 kb on - strand, within GFF2717at 410.873 kb on - strand, within GFF2717at 410.873 kb on - strand, within GFF2717at 410.873 kb on - strand, within GFF2717at 410.874 kb on + strand, within GFF2717at 410.874 kb on + strand, within GFF2717at 410.874 kb on + strand, within GFF2717at 410.874 kb on + strand, within GFF2717at 410.874 kb on + strand, within GFF2717at 410.875 kb on - strand, within GFF2717at 410.875 kb on - strand, within GFF2717at 410.875 kb on - strand, within GFF2717at 410.924 kb on + strand, within GFF2717at 410.924 kb on + strand, within GFF2717at 410.924 kb on + strand, within GFF2717at 410.925 kb on - strand, within GFF2717at 410.925 kb on - strand, within GFF2717at 411.017 kb on - strand, within GFF2717at 411.259 kb on + strand, within GFF2717at 411.260 kb on - strand, within GFF2717at 411.310 kb on + strand, within GFF2717at 411.311 kb on - strand, within GFF2717at 411.311 kb on - strand, within GFF2717at 411.415 kb on - strand, within GFF2717at 411.580 kb on + strand, within GFF2717at 411.581 kb on - strand, within GFF2717at 411.740 kb on + strand, within GFF2717at 411.740 kb on + strand, within GFF2717at 411.740 kb on + strand, within GFF2717at 411.740 kb on + strand, within GFF2717at 411.741 kb on - strand, within GFF2717at 411.741 kb on - strand, within GFF2717at 411.741 kb on - strand, within GFF2717at 411.741 kb on - strand, within GFF2717at 411.954 kb on + strandat 411.954 kb on + strandat 411.954 kb on + strandat 411.977 kb on - strand, within GFF2718at 411.977 kb on - strand, within GFF2718at 412.095 kb on + strand, within GFF2718at 412.095 kb on + strand, within GFF2718at 412.095 kb on + strand, within GFF2718at 412.095 kb on + strand, within GFF2718at 412.095 kb on + strand, within GFF2718at 412.096 kb on - strand, within GFF2718at 412.167 kb on + strand, within GFF2718at 412.167 kb on + strand, within GFF2718at 412.168 kb on - strand, within GFF2718at 412.168 kb on - strand, within GFF2718at 412.168 kb on - strand, within GFF2718at 412.263 kb on + strand, within GFF2718at 412.264 kb on - strand, within GFF2718at 412.295 kb on + strandat 412.295 kb on + strandat 412.295 kb on + strandat 412.295 kb on + strandat 412.295 kb on + strandat 412.296 kb on - strandat 412.296 kb on - strandat 412.296 kb on - strandat 412.296 kb on - strandat 412.314 kb on + strandat 412.463 kb on + strand, within GFF2719at 412.463 kb on + strand, within GFF2719at 412.463 kb on + strand, within GFF2719at 412.463 kb on + strand, within GFF2719at 412.463 kb on + strand, within GFF2719at 412.464 kb on - strand, within GFF2719at 412.464 kb on - strand, within GFF2719at 412.475 kb on + strand, within GFF2719at 412.475 kb on + strand, within GFF2719at 412.476 kb on - strand, within GFF2719at 412.476 kb on - strand, within GFF2719at 412.476 kb on - strand, within GFF2719at 412.476 kb on - strand, within GFF2719at 412.476 kb on - strand, within GFF2719at 412.544 kb on + strand, within GFF2719at 412.544 kb on + strand, within GFF2719at 412.545 kb on - strand, within GFF2719at 412.579 kb on + strand, within GFF2719at 412.778 kb on + strand, within GFF2719at 412.779 kb on - strand, within GFF2719at 412.779 kb on - strand, within GFF2719at 412.826 kb on + strand, within GFF2719at 412.826 kb on + strand, within GFF2719at 412.826 kb on + strand, within GFF2719at 412.827 kb on - strand, within GFF2719at 412.827 kb on - strand, within GFF2719at 412.827 kb on - strand, within GFF2719at 412.829 kb on + strand, within GFF2719at 412.830 kb on - strand, within GFF2719

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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409,823 + -1.5
409,824 - -1.0
409,866 + -0.4
409,866 + -1.8
409,866 + -0.5
409,866 + +0.3
409,867 - -0.3
409,945 + -0.8
409,946 - +0.5
410,086 - +0.8
410,086 - -0.4
410,098 + -0.3
410,098 + -0.2
410,098 + -1.3
410,101 + -0.2
410,102 - -0.3
410,102 - -0.2
410,149 + -0.4
410,150 - -0.0
410,175 + -0.2
410,175 + -0.2
410,176 - -0.7
410,265 + +1.7
410,386 + GFF2716 0.73 +0.1
410,387 - GFF2716 0.74 -0.7
410,587 + -0.0
410,587 + +0.2
410,587 + -0.1
410,587 + -1.3
410,587 + -0.3
410,588 - +0.3
410,588 - +0.1
410,588 - +0.0
410,588 - +0.5
410,588 - -0.1
410,588 - -1.4
410,598 + -0.4
410,599 - +0.5
410,699 + -0.1
410,743 + +0.2
410,743 + -1.3
410,807 - +0.4
410,823 + +0.8
410,872 + GFF2717 0.12 -0.3
410,872 + GFF2717 0.12 -0.4
410,873 - GFF2717 0.12 +0.5
410,873 - GFF2717 0.12 +0.2
410,873 - GFF2717 0.12 -0.7
410,873 - GFF2717 0.12 +0.3
410,874 + GFF2717 0.12 -0.1
410,874 + GFF2717 0.12 +0.0
410,874 + GFF2717 0.12 +1.1
410,874 + GFF2717 0.12 -0.3
410,874 + GFF2717 0.12 +0.2
410,875 - GFF2717 0.12 -0.5
410,875 - GFF2717 0.12 +0.1
410,875 - GFF2717 0.12 +0.5
410,924 + GFF2717 0.16 +0.7
410,924 + GFF2717 0.16 -0.5
410,924 + GFF2717 0.16 +0.4
410,925 - GFF2717 0.16 -0.5
410,925 - GFF2717 0.16 -0.4
411,017 - GFF2717 0.25 +0.6
411,259 + GFF2717 0.46 +0.6
411,260 - GFF2717 0.47 -0.7
411,310 + GFF2717 0.51 -0.9
411,311 - GFF2717 0.51 -0.2
411,311 - GFF2717 0.51 +0.2
411,415 - GFF2717 0.60 -1.8
411,580 + GFF2717 0.75 +0.7
411,581 - GFF2717 0.75 -2.1
411,740 + GFF2717 0.90 +0.3
411,740 + GFF2717 0.90 +0.4
411,740 + GFF2717 0.90 +0.5
411,740 + GFF2717 0.90 -0.3
411,741 - GFF2717 0.90 -0.0
411,741 - GFF2717 0.90 -1.3
411,741 - GFF2717 0.90 +0.4
411,741 - GFF2717 0.90 +1.0
411,954 + +0.9
411,954 + -0.1
411,954 + -0.3
411,977 - GFF2718 0.14 +1.1
411,977 - GFF2718 0.14 -0.2
412,095 + GFF2718 0.43 -0.7
412,095 + GFF2718 0.43 -0.2
412,095 + GFF2718 0.43 +0.1
412,095 + GFF2718 0.43 -1.2
412,095 + GFF2718 0.43 +0.1
412,096 - GFF2718 0.44 -2.3
412,167 + GFF2718 0.62 +0.3
412,167 + GFF2718 0.62 +0.1
412,168 - GFF2718 0.62 -0.0
412,168 - GFF2718 0.62 -0.7
412,168 - GFF2718 0.62 +1.2
412,263 + GFF2718 0.86 +0.5
412,264 - GFF2718 0.86 +0.7
412,295 + -1.3
412,295 + +0.0
412,295 + +0.1
412,295 + -0.3
412,295 + -0.7
412,296 - -1.1
412,296 - +0.4
412,296 - +0.6
412,296 - -0.4
412,314 + -0.7
412,463 + GFF2719 0.12 +1.9
412,463 + GFF2719 0.12 -1.1
412,463 + GFF2719 0.12 -1.8
412,463 + GFF2719 0.12 +0.3
412,463 + GFF2719 0.12 +0.2
412,464 - GFF2719 0.12 +0.8
412,464 - GFF2719 0.12 +0.3
412,475 + GFF2719 0.14 +0.3
412,475 + GFF2719 0.14 +0.1
412,476 - GFF2719 0.14 +0.3
412,476 - GFF2719 0.14 +0.4
412,476 - GFF2719 0.14 +1.0
412,476 - GFF2719 0.14 -0.9
412,476 - GFF2719 0.14 +0.3
412,544 + GFF2719 0.22 -0.7
412,544 + GFF2719 0.22 +0.0
412,545 - GFF2719 0.22 +0.7
412,579 + GFF2719 0.26 +0.2
412,778 + GFF2719 0.51 +0.4
412,779 - GFF2719 0.51 +0.2
412,779 - GFF2719 0.51 +0.4
412,826 + GFF2719 0.57 +0.9
412,826 + GFF2719 0.57 +0.3
412,826 + GFF2719 0.57 +0.1
412,827 - GFF2719 0.57 -0.4
412,827 - GFF2719 0.57 +0.1
412,827 - GFF2719 0.57 +0.3
412,829 + GFF2719 0.57 +0.5
412,830 - GFF2719 0.57 +0.3

Or see this region's nucleotide sequence