Strain Fitness in Xanthobacter sp. DMC5 around GFF2710

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2709 and GFF2710 overlap by 4 nucleotidesGFF2710 and GFF2711 are separated by 542 nucleotides GFF2709 - ABC transporter ATP-binding/permease protein YojI, at 399,871 to 401,556 GFF2709 GFF2710 - Iron(3+)-hydroxamate import ATP-binding protein FhuC, at 401,553 to 402,341 GFF2710 GFF2711 - hypothetical protein, at 402,884 to 403,624 GFF2711 Position (kb) 401 402 403Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 400.600 kb on + strand, within GFF2709at 400.600 kb on + strand, within GFF2709at 400.600 kb on + strand, within GFF2709at 400.601 kb on - strand, within GFF2709at 400.601 kb on - strand, within GFF2709at 400.638 kb on + strand, within GFF2709at 400.639 kb on - strand, within GFF2709at 400.682 kb on + strand, within GFF2709at 400.683 kb on - strand, within GFF2709at 400.683 kb on - strand, within GFF2709at 400.683 kb on - strand, within GFF2709at 400.723 kb on + strand, within GFF2709at 400.724 kb on - strand, within GFF2709at 400.724 kb on - strand, within GFF2709at 400.724 kb on - strand, within GFF2709at 400.797 kb on + strand, within GFF2709at 400.797 kb on + strand, within GFF2709at 400.797 kb on + strand, within GFF2709at 400.797 kb on + strand, within GFF2709at 400.797 kb on + strand, within GFF2709at 400.798 kb on - strand, within GFF2709at 400.798 kb on - strand, within GFF2709at 400.798 kb on - strand, within GFF2709at 400.866 kb on - strand, within GFF2709at 400.888 kb on - strand, within GFF2709at 400.888 kb on - strand, within GFF2709at 400.909 kb on + strand, within GFF2709at 400.909 kb on + strand, within GFF2709at 400.909 kb on + strand, within GFF2709at 400.909 kb on + strand, within GFF2709at 401.051 kb on - strand, within GFF2709at 401.119 kb on - strand, within GFF2709at 401.149 kb on + strand, within GFF2709at 401.149 kb on + strand, within GFF2709at 401.149 kb on + strand, within GFF2709at 401.150 kb on - strand, within GFF2709at 401.150 kb on - strand, within GFF2709at 401.150 kb on - strand, within GFF2709at 401.386 kb on + strand, within GFF2709at 401.465 kb on + strandat 401.466 kb on - strandat 401.529 kb on + strandat 401.530 kb on - strandat 401.598 kb on + strandat 401.598 kb on + strandat 401.598 kb on + strandat 401.598 kb on + strandat 401.599 kb on - strandat 401.599 kb on - strandat 401.599 kb on - strandat 401.599 kb on - strandat 401.599 kb on - strandat 401.643 kb on - strand, within GFF2710at 401.696 kb on + strand, within GFF2710at 401.696 kb on + strand, within GFF2710at 401.696 kb on + strand, within GFF2710at 401.696 kb on + strand, within GFF2710at 401.696 kb on + strand, within GFF2710at 401.696 kb on + strand, within GFF2710at 401.697 kb on - strand, within GFF2710at 401.697 kb on - strand, within GFF2710at 401.697 kb on - strand, within GFF2710at 401.697 kb on - strand, within GFF2710at 401.808 kb on + strand, within GFF2710at 401.809 kb on - strand, within GFF2710at 401.809 kb on - strand, within GFF2710at 401.809 kb on - strand, within GFF2710at 401.809 kb on - strand, within GFF2710at 401.874 kb on + strand, within GFF2710at 401.951 kb on + strand, within GFF2710at 402.082 kb on + strand, within GFF2710at 402.082 kb on + strand, within GFF2710at 402.082 kb on + strand, within GFF2710at 402.082 kb on + strand, within GFF2710at 402.082 kb on + strand, within GFF2710at 402.082 kb on + strand, within GFF2710at 402.082 kb on + strand, within GFF2710at 402.082 kb on + strand, within GFF2710at 402.083 kb on - strand, within GFF2710at 402.083 kb on - strand, within GFF2710at 402.083 kb on - strand, within GFF2710at 402.083 kb on - strand, within GFF2710at 402.148 kb on + strand, within GFF2710at 402.148 kb on + strand, within GFF2710at 402.148 kb on + strand, within GFF2710at 402.148 kb on + strand, within GFF2710at 402.148 kb on + strand, within GFF2710at 402.148 kb on + strand, within GFF2710at 402.148 kb on + strand, within GFF2710at 402.148 kb on + strand, within GFF2710at 402.148 kb on + strand, within GFF2710at 402.149 kb on - strand, within GFF2710at 402.149 kb on - strand, within GFF2710at 402.149 kb on - strand, within GFF2710at 402.245 kb on + strand, within GFF2710at 402.246 kb on - strand, within GFF2710at 402.246 kb on - strand, within GFF2710at 402.276 kb on + strandat 402.276 kb on + strandat 402.277 kb on - strandat 402.277 kb on - strandat 402.283 kb on + strandat 402.283 kb on + strandat 402.284 kb on - strandat 402.367 kb on + strandat 402.367 kb on + strandat 402.367 kb on + strandat 402.367 kb on + strandat 402.367 kb on + strandat 402.367 kb on + strandat 402.368 kb on - strandat 402.368 kb on - strandat 402.368 kb on - strandat 402.368 kb on - strandat 402.368 kb on - strandat 402.380 kb on + strandat 402.381 kb on - strandat 402.381 kb on - strandat 402.381 kb on - strandat 402.438 kb on + strandat 402.439 kb on - strandat 402.450 kb on - strandat 402.502 kb on + strandat 402.502 kb on + strandat 402.503 kb on - strandat 402.572 kb on + strandat 402.572 kb on + strandat 402.573 kb on - strandat 402.573 kb on - strandat 402.622 kb on + strandat 402.622 kb on + strandat 402.833 kb on + strandat 402.857 kb on + strandat 402.898 kb on - strandat 402.922 kb on + strandat 402.922 kb on + strandat 402.922 kb on + strandat 402.922 kb on + strandat 402.923 kb on - strandat 402.984 kb on + strand, within GFF2711at 402.984 kb on + strand, within GFF2711at 402.984 kb on + strand, within GFF2711at 402.984 kb on + strand, within GFF2711at 402.985 kb on - strand, within GFF2711at 403.065 kb on + strand, within GFF2711at 403.065 kb on + strand, within GFF2711at 403.066 kb on - strand, within GFF2711at 403.066 kb on - strand, within GFF2711at 403.110 kb on + strand, within GFF2711at 403.111 kb on - strand, within GFF2711at 403.152 kb on + strand, within GFF2711at 403.152 kb on + strand, within GFF2711at 403.152 kb on + strand, within GFF2711at 403.152 kb on + strand, within GFF2711at 403.153 kb on - strand, within GFF2711at 403.153 kb on - strand, within GFF2711at 403.153 kb on - strand, within GFF2711at 403.153 kb on - strand, within GFF2711at 403.153 kb on - strand, within GFF2711

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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400,600 + GFF2709 0.43 +0.6
400,600 + GFF2709 0.43 +0.1
400,600 + GFF2709 0.43 +0.2
400,601 - GFF2709 0.43 +0.4
400,601 - GFF2709 0.43 +0.1
400,638 + GFF2709 0.45 -0.4
400,639 - GFF2709 0.46 +0.6
400,682 + GFF2709 0.48 +0.0
400,683 - GFF2709 0.48 -0.2
400,683 - GFF2709 0.48 +0.5
400,683 - GFF2709 0.48 +0.1
400,723 + GFF2709 0.51 -0.1
400,724 - GFF2709 0.51 -0.3
400,724 - GFF2709 0.51 +0.1
400,724 - GFF2709 0.51 +0.0
400,797 + GFF2709 0.55 -1.2
400,797 + GFF2709 0.55 -0.5
400,797 + GFF2709 0.55 +1.5
400,797 + GFF2709 0.55 +0.1
400,797 + GFF2709 0.55 +0.2
400,798 - GFF2709 0.55 -1.4
400,798 - GFF2709 0.55 -1.3
400,798 - GFF2709 0.55 +0.0
400,866 - GFF2709 0.59 -0.7
400,888 - GFF2709 0.60 -3.0
400,888 - GFF2709 0.60 -1.3
400,909 + GFF2709 0.62 +0.6
400,909 + GFF2709 0.62 -0.3
400,909 + GFF2709 0.62 -0.6
400,909 + GFF2709 0.62 -1.4
401,051 - GFF2709 0.70 +0.3
401,119 - GFF2709 0.74 +0.1
401,149 + GFF2709 0.76 +0.0
401,149 + GFF2709 0.76 +0.1
401,149 + GFF2709 0.76 +0.5
401,150 - GFF2709 0.76 +0.1
401,150 - GFF2709 0.76 -0.9
401,150 - GFF2709 0.76 +0.5
401,386 + GFF2709 0.90 -1.0
401,465 + -0.5
401,466 - +0.3
401,529 + -0.4
401,530 - -1.0
401,598 + -1.1
401,598 + +0.5
401,598 + -1.0
401,598 + -0.1
401,599 - -0.9
401,599 - +0.1
401,599 - -0.1
401,599 - -0.2
401,599 - -0.9
401,643 - GFF2710 0.11 +0.1
401,696 + GFF2710 0.18 +0.4
401,696 + GFF2710 0.18 +0.4
401,696 + GFF2710 0.18 -0.0
401,696 + GFF2710 0.18 +0.8
401,696 + GFF2710 0.18 +0.6
401,696 + GFF2710 0.18 +0.9
401,697 - GFF2710 0.18 -0.0
401,697 - GFF2710 0.18 +0.3
401,697 - GFF2710 0.18 +0.1
401,697 - GFF2710 0.18 -0.6
401,808 + GFF2710 0.32 -0.6
401,809 - GFF2710 0.32 -0.1
401,809 - GFF2710 0.32 -1.1
401,809 - GFF2710 0.32 -0.7
401,809 - GFF2710 0.32 +0.5
401,874 + GFF2710 0.41 -0.2
401,951 + GFF2710 0.50 +0.2
402,082 + GFF2710 0.67 -0.6
402,082 + GFF2710 0.67 +1.3
402,082 + GFF2710 0.67 -0.1
402,082 + GFF2710 0.67 +0.7
402,082 + GFF2710 0.67 -0.4
402,082 + GFF2710 0.67 +1.5
402,082 + GFF2710 0.67 -0.7
402,082 + GFF2710 0.67 +0.5
402,083 - GFF2710 0.67 -0.3
402,083 - GFF2710 0.67 +0.1
402,083 - GFF2710 0.67 +0.1
402,083 - GFF2710 0.67 +0.2
402,148 + GFF2710 0.75 +0.0
402,148 + GFF2710 0.75 -0.4
402,148 + GFF2710 0.75 +0.3
402,148 + GFF2710 0.75 +1.9
402,148 + GFF2710 0.75 -0.2
402,148 + GFF2710 0.75 +0.0
402,148 + GFF2710 0.75 +0.5
402,148 + GFF2710 0.75 -0.1
402,148 + GFF2710 0.75 +0.9
402,149 - GFF2710 0.76 -1.9
402,149 - GFF2710 0.76 +0.4
402,149 - GFF2710 0.76 -0.1
402,245 + GFF2710 0.88 -0.9
402,246 - GFF2710 0.88 -0.3
402,246 - GFF2710 0.88 +0.7
402,276 + -0.1
402,276 + -1.1
402,277 - +0.3
402,277 - +0.3
402,283 + +1.5
402,283 + -0.8
402,284 - -0.8
402,367 + -1.0
402,367 + +0.7
402,367 + -0.3
402,367 + -0.9
402,367 + +1.2
402,367 + -0.7
402,368 - -0.7
402,368 - +0.0
402,368 - +0.3
402,368 - +0.4
402,368 - -0.2
402,380 + +0.3
402,381 - -0.1
402,381 - +0.4
402,381 - -0.1
402,438 + +0.9
402,439 - +0.1
402,450 - -0.3
402,502 + +0.5
402,502 + +1.3
402,503 - +1.3
402,572 + -0.5
402,572 + -0.5
402,573 - +0.2
402,573 - +0.5
402,622 + -0.7
402,622 + +0.4
402,833 + -0.5
402,857 + +0.0
402,898 - +0.6
402,922 + +0.1
402,922 + +0.3
402,922 + -1.1
402,922 + -0.9
402,923 - -0.4
402,984 + GFF2711 0.13 +0.0
402,984 + GFF2711 0.13 +0.3
402,984 + GFF2711 0.13 +0.8
402,984 + GFF2711 0.13 +0.1
402,985 - GFF2711 0.14 -0.3
403,065 + GFF2711 0.24 -0.4
403,065 + GFF2711 0.24 +0.2
403,066 - GFF2711 0.25 +0.5
403,066 - GFF2711 0.25 +0.2
403,110 + GFF2711 0.30 -0.1
403,111 - GFF2711 0.31 +1.1
403,152 + GFF2711 0.36 +1.6
403,152 + GFF2711 0.36 -0.6
403,152 + GFF2711 0.36 +0.4
403,152 + GFF2711 0.36 -0.6
403,153 - GFF2711 0.36 -0.7
403,153 - GFF2711 0.36 -1.0
403,153 - GFF2711 0.36 +0.1
403,153 - GFF2711 0.36 +0.3
403,153 - GFF2711 0.36 +0.5

Or see this region's nucleotide sequence