Strain Fitness in Xanthobacter sp. DMC5 around GFF2707

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2706 and GFF2707 are separated by 9 nucleotidesGFF2707 and GFF2708 overlap by 4 nucleotides GFF2706 - Ferrichrome outer membrane transporter/phage receptor, at 394,500 to 396,926 GFF2706 GFF2707 - Iron(3+)-hydroxamate-binding protein FhuD, at 396,936 to 397,850 GFF2707 GFF2708 - Iron(3+)-hydroxamate import system permease protein FhuB, at 397,847 to 399,874 GFF2708 Position (kb) 396 397 398Strain fitness (log2 ratio) -1 0 1 2at 395.949 kb on + strand, within GFF2706at 395.950 kb on - strand, within GFF2706at 396.007 kb on + strand, within GFF2706at 396.007 kb on + strand, within GFF2706at 396.007 kb on + strand, within GFF2706at 396.007 kb on + strand, within GFF2706at 396.008 kb on - strand, within GFF2706at 396.021 kb on + strand, within GFF2706at 396.022 kb on - strand, within GFF2706at 396.033 kb on + strand, within GFF2706at 396.033 kb on + strand, within GFF2706at 396.033 kb on + strand, within GFF2706at 396.034 kb on - strand, within GFF2706at 396.090 kb on + strand, within GFF2706at 396.091 kb on - strand, within GFF2706at 396.091 kb on - strand, within GFF2706at 396.091 kb on - strand, within GFF2706at 396.237 kb on + strand, within GFF2706at 396.237 kb on + strand, within GFF2706at 396.238 kb on - strand, within GFF2706at 396.238 kb on - strand, within GFF2706at 396.264 kb on + strand, within GFF2706at 396.264 kb on + strand, within GFF2706at 396.265 kb on - strand, within GFF2706at 396.273 kb on + strand, within GFF2706at 396.273 kb on + strand, within GFF2706at 396.274 kb on - strand, within GFF2706at 396.274 kb on - strand, within GFF2706at 396.274 kb on - strand, within GFF2706at 396.348 kb on + strand, within GFF2706at 396.349 kb on - strand, within GFF2706at 396.366 kb on + strand, within GFF2706at 396.366 kb on + strand, within GFF2706at 396.366 kb on + strand, within GFF2706at 396.366 kb on + strand, within GFF2706at 396.367 kb on - strand, within GFF2706at 396.367 kb on - strand, within GFF2706at 396.463 kb on - strand, within GFF2706at 396.463 kb on - strand, within GFF2706at 396.463 kb on - strand, within GFF2706at 396.463 kb on - strand, within GFF2706at 396.555 kb on + strand, within GFF2706at 396.555 kb on + strand, within GFF2706at 396.556 kb on - strand, within GFF2706at 396.557 kb on + strand, within GFF2706at 396.557 kb on + strand, within GFF2706at 396.557 kb on + strand, within GFF2706at 396.558 kb on - strand, within GFF2706at 396.558 kb on - strand, within GFF2706at 396.558 kb on - strand, within GFF2706at 396.561 kb on + strand, within GFF2706at 396.561 kb on + strand, within GFF2706at 396.561 kb on + strand, within GFF2706at 396.561 kb on + strand, within GFF2706at 396.561 kb on + strand, within GFF2706at 396.561 kb on + strand, within GFF2706at 396.561 kb on + strand, within GFF2706at 396.561 kb on + strand, within GFF2706at 396.561 kb on + strand, within GFF2706at 396.562 kb on - strand, within GFF2706at 396.562 kb on - strand, within GFF2706at 396.618 kb on + strand, within GFF2706at 396.653 kb on + strand, within GFF2706at 396.654 kb on - strand, within GFF2706at 396.843 kb on + strandat 396.843 kb on + strandat 396.844 kb on - strandat 396.844 kb on - strandat 396.844 kb on - strandat 396.844 kb on - strandat 396.867 kb on + strandat 396.868 kb on - strandat 396.876 kb on + strandat 396.879 kb on + strandat 396.879 kb on + strandat 396.880 kb on - strandat 396.880 kb on - strandat 396.915 kb on + strandat 396.915 kb on + strandat 396.916 kb on - strandat 396.916 kb on - strandat 396.916 kb on - strandat 397.098 kb on + strand, within GFF2707at 397.098 kb on + strand, within GFF2707at 397.098 kb on + strand, within GFF2707at 397.098 kb on + strand, within GFF2707at 397.099 kb on - strand, within GFF2707at 397.099 kb on - strand, within GFF2707at 397.099 kb on - strand, within GFF2707at 397.103 kb on + strand, within GFF2707at 397.140 kb on - strand, within GFF2707at 397.143 kb on + strand, within GFF2707at 397.144 kb on - strand, within GFF2707at 397.344 kb on + strand, within GFF2707at 397.345 kb on - strand, within GFF2707at 397.345 kb on - strand, within GFF2707at 397.345 kb on - strand, within GFF2707at 397.422 kb on - strand, within GFF2707at 397.467 kb on + strand, within GFF2707at 397.485 kb on + strand, within GFF2707at 397.485 kb on + strand, within GFF2707at 397.486 kb on - strand, within GFF2707at 397.486 kb on - strand, within GFF2707at 398.044 kb on - strandat 398.045 kb on + strandat 398.157 kb on + strand, within GFF2708at 398.158 kb on - strand, within GFF2708at 398.158 kb on - strand, within GFF2708at 398.158 kb on - strand, within GFF2708at 398.158 kb on - strand, within GFF2708at 398.158 kb on - strand, within GFF2708at 398.158 kb on - strand, within GFF2708at 398.158 kb on - strand, within GFF2708at 398.204 kb on + strand, within GFF2708at 398.205 kb on - strand, within GFF2708at 398.212 kb on + strand, within GFF2708at 398.213 kb on - strand, within GFF2708at 398.213 kb on - strand, within GFF2708at 398.322 kb on + strand, within GFF2708at 398.322 kb on + strand, within GFF2708at 398.322 kb on + strand, within GFF2708at 398.323 kb on - strand, within GFF2708at 398.323 kb on - strand, within GFF2708at 398.625 kb on + strand, within GFF2708at 398.626 kb on - strand, within GFF2708at 398.626 kb on - strand, within GFF2708at 398.820 kb on + strand, within GFF2708at 398.821 kb on - strand, within GFF2708

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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395,949 + GFF2706 0.60 +0.6
395,950 - GFF2706 0.60 +1.0
396,007 + GFF2706 0.62 +0.7
396,007 + GFF2706 0.62 +0.4
396,007 + GFF2706 0.62 -0.4
396,007 + GFF2706 0.62 -0.8
396,008 - GFF2706 0.62 -0.8
396,021 + GFF2706 0.63 -0.1
396,022 - GFF2706 0.63 +0.4
396,033 + GFF2706 0.63 +0.9
396,033 + GFF2706 0.63 +0.8
396,033 + GFF2706 0.63 +0.5
396,034 - GFF2706 0.63 -0.4
396,090 + GFF2706 0.66 -0.1
396,091 - GFF2706 0.66 +1.1
396,091 - GFF2706 0.66 +0.6
396,091 - GFF2706 0.66 -1.1
396,237 + GFF2706 0.72 +0.5
396,237 + GFF2706 0.72 -0.1
396,238 - GFF2706 0.72 -0.5
396,238 - GFF2706 0.72 +0.1
396,264 + GFF2706 0.73 +0.4
396,264 + GFF2706 0.73 -0.6
396,265 - GFF2706 0.73 -0.2
396,273 + GFF2706 0.73 +0.0
396,273 + GFF2706 0.73 +0.4
396,274 - GFF2706 0.73 -0.1
396,274 - GFF2706 0.73 +0.5
396,274 - GFF2706 0.73 +0.9
396,348 + GFF2706 0.76 -0.4
396,349 - GFF2706 0.76 -0.1
396,366 + GFF2706 0.77 -0.8
396,366 + GFF2706 0.77 +1.1
396,366 + GFF2706 0.77 +0.5
396,366 + GFF2706 0.77 +0.2
396,367 - GFF2706 0.77 -0.4
396,367 - GFF2706 0.77 -0.3
396,463 - GFF2706 0.81 +0.9
396,463 - GFF2706 0.81 +0.2
396,463 - GFF2706 0.81 -0.3
396,463 - GFF2706 0.81 +0.2
396,555 + GFF2706 0.85 +0.3
396,555 + GFF2706 0.85 -0.9
396,556 - GFF2706 0.85 -1.7
396,557 + GFF2706 0.85 -0.1
396,557 + GFF2706 0.85 -0.2
396,557 + GFF2706 0.85 -0.2
396,558 - GFF2706 0.85 +0.7
396,558 - GFF2706 0.85 -1.3
396,558 - GFF2706 0.85 -0.2
396,561 + GFF2706 0.85 +0.1
396,561 + GFF2706 0.85 -0.1
396,561 + GFF2706 0.85 +0.8
396,561 + GFF2706 0.85 -0.2
396,561 + GFF2706 0.85 +0.2
396,561 + GFF2706 0.85 -0.1
396,561 + GFF2706 0.85 -0.1
396,561 + GFF2706 0.85 +0.1
396,561 + GFF2706 0.85 -0.4
396,562 - GFF2706 0.85 +0.2
396,562 - GFF2706 0.85 +0.1
396,618 + GFF2706 0.87 -0.0
396,653 + GFF2706 0.89 -0.1
396,654 - GFF2706 0.89 +0.2
396,843 + -0.1
396,843 + -0.3
396,844 - -0.0
396,844 - -0.1
396,844 - +0.2
396,844 - -0.4
396,867 + +0.3
396,868 - -0.8
396,876 + -0.1
396,879 + +0.3
396,879 + +0.1
396,880 - -0.4
396,880 - +0.5
396,915 + -0.8
396,915 + -0.3
396,916 - +0.0
396,916 - -0.2
396,916 - -0.7
397,098 + GFF2707 0.18 -1.6
397,098 + GFF2707 0.18 -0.3
397,098 + GFF2707 0.18 +0.0
397,098 + GFF2707 0.18 +0.2
397,099 - GFF2707 0.18 -0.9
397,099 - GFF2707 0.18 +0.9
397,099 - GFF2707 0.18 -0.6
397,103 + GFF2707 0.18 -0.3
397,140 - GFF2707 0.22 +0.3
397,143 + GFF2707 0.23 -1.3
397,144 - GFF2707 0.23 -0.4
397,344 + GFF2707 0.45 +1.9
397,345 - GFF2707 0.45 +0.5
397,345 - GFF2707 0.45 -1.0
397,345 - GFF2707 0.45 +0.7
397,422 - GFF2707 0.53 -0.2
397,467 + GFF2707 0.58 -1.2
397,485 + GFF2707 0.60 -1.7
397,485 + GFF2707 0.60 +0.5
397,486 - GFF2707 0.60 -1.0
397,486 - GFF2707 0.60 +1.7
398,044 - -0.7
398,045 + +0.4
398,157 + GFF2708 0.15 +1.6
398,158 - GFF2708 0.15 -0.6
398,158 - GFF2708 0.15 -0.5
398,158 - GFF2708 0.15 -0.3
398,158 - GFF2708 0.15 -1.0
398,158 - GFF2708 0.15 -1.0
398,158 - GFF2708 0.15 -0.7
398,158 - GFF2708 0.15 -0.9
398,204 + GFF2708 0.18 -0.3
398,205 - GFF2708 0.18 +0.3
398,212 + GFF2708 0.18 +0.1
398,213 - GFF2708 0.18 +0.3
398,213 - GFF2708 0.18 +0.6
398,322 + GFF2708 0.23 -0.4
398,322 + GFF2708 0.23 -0.1
398,322 + GFF2708 0.23 -0.1
398,323 - GFF2708 0.23 -0.9
398,323 - GFF2708 0.23 +0.1
398,625 + GFF2708 0.38 +0.4
398,626 - GFF2708 0.38 -0.5
398,626 - GFF2708 0.38 -0.8
398,820 + GFF2708 0.48 -0.3
398,821 - GFF2708 0.48 +0.1

Or see this region's nucleotide sequence