Strain Fitness in Xanthobacter sp. DMC5 around GFF2690

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2688 and GFF2689 are separated by 115 nucleotidesGFF2689 and GFF2690 are separated by 266 nucleotidesGFF2690 and GFF2691 are separated by 20 nucleotidesGFF2691 and GFF2692 overlap by 1 nucleotidesGFF2692 and GFF2693 overlap by 4 nucleotides GFF2688 - hypothetical protein, at 372,653 to 373,720 GFF2688 GFF2689 - hypothetical protein, at 373,836 to 374,132 GFF2689 GFF2690 - hypothetical protein, at 374,399 to 375,190 GFF2690 GFF2691 - hypothetical protein, at 375,211 to 375,669 GFF2691 GFF2692 - hypothetical protein, at 375,669 to 376,181 GFF2692 GFF2693 - hypothetical protein, at 376,178 to 376,657 GFF2693 Position (kb) 374 375 376Strain fitness (log2 ratio) -1 0 1 2at 373.415 kb on - strand, within GFF2688at 373.450 kb on - strand, within GFF2688at 373.545 kb on - strand, within GFF2688at 373.567 kb on + strand, within GFF2688at 373.611 kb on + strand, within GFF2688at 373.750 kb on + strandat 373.857 kb on - strandat 374.033 kb on + strand, within GFF2689at 374.034 kb on - strand, within GFF2689at 374.034 kb on - strand, within GFF2689at 374.307 kb on + strandat 374.307 kb on + strandat 374.307 kb on + strandat 374.308 kb on - strandat 374.308 kb on - strandat 374.308 kb on - strandat 374.308 kb on - strandat 374.308 kb on - strandat 374.308 kb on - strandat 374.308 kb on - strandat 374.308 kb on - strandat 374.318 kb on - strandat 374.455 kb on - strandat 374.490 kb on - strand, within GFF2690at 374.490 kb on - strand, within GFF2690at 374.491 kb on + strand, within GFF2690at 374.491 kb on + strand, within GFF2690at 374.491 kb on + strand, within GFF2690at 374.491 kb on + strand, within GFF2690at 374.491 kb on + strand, within GFF2690at 374.491 kb on + strand, within GFF2690at 374.492 kb on - strand, within GFF2690at 374.492 kb on - strand, within GFF2690at 374.492 kb on - strand, within GFF2690at 374.492 kb on - strand, within GFF2690at 374.753 kb on + strand, within GFF2690at 374.753 kb on + strand, within GFF2690at 374.753 kb on + strand, within GFF2690at 374.753 kb on + strand, within GFF2690at 374.753 kb on + strand, within GFF2690at 374.753 kb on + strand, within GFF2690at 374.754 kb on - strand, within GFF2690at 374.754 kb on - strand, within GFF2690at 374.760 kb on + strand, within GFF2690at 374.760 kb on + strand, within GFF2690at 374.858 kb on + strand, within GFF2690at 374.858 kb on + strand, within GFF2690at 374.859 kb on - strand, within GFF2690at 374.859 kb on - strand, within GFF2690at 374.859 kb on - strand, within GFF2690at 374.986 kb on + strand, within GFF2690at 374.987 kb on - strand, within GFF2690at 375.084 kb on + strand, within GFF2690at 375.084 kb on + strand, within GFF2690at 375.084 kb on + strand, within GFF2690at 375.084 kb on + strand, within GFF2690at 375.084 kb on + strand, within GFF2690at 375.084 kb on + strand, within GFF2690at 375.085 kb on - strand, within GFF2690at 375.085 kb on - strand, within GFF2690at 375.085 kb on - strand, within GFF2690at 375.100 kb on + strand, within GFF2690at 375.188 kb on - strandat 375.275 kb on + strand, within GFF2691at 375.276 kb on - strand, within GFF2691at 375.276 kb on - strand, within GFF2691at 375.343 kb on + strand, within GFF2691at 375.343 kb on + strand, within GFF2691at 375.344 kb on - strand, within GFF2691at 375.344 kb on - strand, within GFF2691at 375.344 kb on - strand, within GFF2691at 375.344 kb on - strand, within GFF2691at 375.404 kb on - strand, within GFF2691at 375.404 kb on - strand, within GFF2691at 375.404 kb on - strand, within GFF2691at 375.404 kb on - strand, within GFF2691at 375.529 kb on + strand, within GFF2691at 375.529 kb on + strand, within GFF2691at 375.529 kb on + strand, within GFF2691at 375.574 kb on + strand, within GFF2691at 375.575 kb on + strand, within GFF2691at 375.575 kb on + strand, within GFF2691at 375.576 kb on - strand, within GFF2691at 375.601 kb on + strand, within GFF2691at 375.601 kb on + strand, within GFF2691at 375.601 kb on + strand, within GFF2691at 375.602 kb on - strand, within GFF2691at 375.602 kb on - strand, within GFF2691at 375.732 kb on + strand, within GFF2692at 375.732 kb on + strand, within GFF2692at 375.732 kb on + strand, within GFF2692at 375.733 kb on - strand, within GFF2692at 375.733 kb on - strand, within GFF2692at 375.733 kb on - strand, within GFF2692at 375.733 kb on - strand, within GFF2692at 375.733 kb on - strand, within GFF2692at 375.733 kb on - strand, within GFF2692at 375.733 kb on - strand, within GFF2692at 375.733 kb on - strand, within GFF2692at 375.733 kb on - strand, within GFF2692at 375.777 kb on + strand, within GFF2692at 375.778 kb on - strand, within GFF2692at 375.865 kb on - strand, within GFF2692at 375.955 kb on + strand, within GFF2692at 375.955 kb on + strand, within GFF2692at 375.955 kb on + strand, within GFF2692at 375.955 kb on + strand, within GFF2692at 375.956 kb on - strand, within GFF2692at 375.956 kb on - strand, within GFF2692at 375.956 kb on - strand, within GFF2692at 375.956 kb on - strand, within GFF2692at 375.956 kb on - strand, within GFF2692at 375.961 kb on - strand, within GFF2692at 375.961 kb on - strand, within GFF2692at 376.051 kb on + strand, within GFF2692at 376.051 kb on + strand, within GFF2692at 376.051 kb on + strand, within GFF2692at 376.052 kb on - strand, within GFF2692at 376.179 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
373,415 - GFF2688 0.71 -0.1
373,450 - GFF2688 0.75 +0.4
373,545 - GFF2688 0.84 +0.1
373,567 + GFF2688 0.86 +0.4
373,611 + GFF2688 0.90 -0.3
373,750 + +0.4
373,857 - -0.5
374,033 + GFF2689 0.66 -0.9
374,034 - GFF2689 0.67 +0.6
374,034 - GFF2689 0.67 +0.2
374,307 + +0.0
374,307 + +0.1
374,307 + +0.7
374,308 - -0.0
374,308 - -1.5
374,308 - -0.2
374,308 - -0.1
374,308 - -0.3
374,308 - -1.1
374,308 - -0.5
374,308 - -0.1
374,318 - -0.5
374,455 - -0.0
374,490 - GFF2690 0.11 -0.5
374,490 - GFF2690 0.11 -0.7
374,491 + GFF2690 0.12 +0.1
374,491 + GFF2690 0.12 +0.9
374,491 + GFF2690 0.12 -0.8
374,491 + GFF2690 0.12 +0.7
374,491 + GFF2690 0.12 +0.2
374,491 + GFF2690 0.12 -0.9
374,492 - GFF2690 0.12 +0.4
374,492 - GFF2690 0.12 -0.5
374,492 - GFF2690 0.12 -0.4
374,492 - GFF2690 0.12 -1.0
374,753 + GFF2690 0.45 +0.6
374,753 + GFF2690 0.45 +0.5
374,753 + GFF2690 0.45 +0.2
374,753 + GFF2690 0.45 -0.4
374,753 + GFF2690 0.45 -0.3
374,753 + GFF2690 0.45 +0.5
374,754 - GFF2690 0.45 -0.6
374,754 - GFF2690 0.45 +0.3
374,760 + GFF2690 0.46 -0.2
374,760 + GFF2690 0.46 -0.9
374,858 + GFF2690 0.58 -0.5
374,858 + GFF2690 0.58 -0.5
374,859 - GFF2690 0.58 -1.0
374,859 - GFF2690 0.58 -0.5
374,859 - GFF2690 0.58 +0.1
374,986 + GFF2690 0.74 +0.3
374,987 - GFF2690 0.74 -0.4
375,084 + GFF2690 0.86 +0.4
375,084 + GFF2690 0.86 +0.2
375,084 + GFF2690 0.86 +0.8
375,084 + GFF2690 0.86 -1.3
375,084 + GFF2690 0.86 +1.1
375,084 + GFF2690 0.86 -0.2
375,085 - GFF2690 0.87 -1.3
375,085 - GFF2690 0.87 +0.2
375,085 - GFF2690 0.87 -0.5
375,100 + GFF2690 0.89 +0.1
375,188 - -0.7
375,275 + GFF2691 0.14 -0.1
375,276 - GFF2691 0.14 -0.2
375,276 - GFF2691 0.14 +0.5
375,343 + GFF2691 0.29 +0.7
375,343 + GFF2691 0.29 -0.9
375,344 - GFF2691 0.29 -1.3
375,344 - GFF2691 0.29 -0.7
375,344 - GFF2691 0.29 +0.3
375,344 - GFF2691 0.29 -1.3
375,404 - GFF2691 0.42 +0.2
375,404 - GFF2691 0.42 -1.4
375,404 - GFF2691 0.42 -0.2
375,404 - GFF2691 0.42 +1.6
375,529 + GFF2691 0.69 +0.4
375,529 + GFF2691 0.69 +0.9
375,529 + GFF2691 0.69 +0.1
375,574 + GFF2691 0.79 +1.9
375,575 + GFF2691 0.79 -0.6
375,575 + GFF2691 0.79 -0.4
375,576 - GFF2691 0.80 -0.1
375,601 + GFF2691 0.85 +0.3
375,601 + GFF2691 0.85 -0.3
375,601 + GFF2691 0.85 -0.1
375,602 - GFF2691 0.85 +0.3
375,602 - GFF2691 0.85 +0.3
375,732 + GFF2692 0.12 -0.5
375,732 + GFF2692 0.12 +0.6
375,732 + GFF2692 0.12 +0.6
375,733 - GFF2692 0.12 +0.1
375,733 - GFF2692 0.12 +0.2
375,733 - GFF2692 0.12 +0.0
375,733 - GFF2692 0.12 +0.2
375,733 - GFF2692 0.12 -0.4
375,733 - GFF2692 0.12 +0.5
375,733 - GFF2692 0.12 +0.4
375,733 - GFF2692 0.12 +1.6
375,733 - GFF2692 0.12 +0.2
375,777 + GFF2692 0.21 -1.3
375,778 - GFF2692 0.21 -0.6
375,865 - GFF2692 0.38 -1.5
375,955 + GFF2692 0.56 -0.1
375,955 + GFF2692 0.56 +0.3
375,955 + GFF2692 0.56 -0.6
375,955 + GFF2692 0.56 -0.3
375,956 - GFF2692 0.56 -0.3
375,956 - GFF2692 0.56 -1.1
375,956 - GFF2692 0.56 +0.2
375,956 - GFF2692 0.56 -0.1
375,956 - GFF2692 0.56 +0.6
375,961 - GFF2692 0.57 -0.2
375,961 - GFF2692 0.57 +1.2
376,051 + GFF2692 0.74 +0.9
376,051 + GFF2692 0.74 -0.3
376,051 + GFF2692 0.74 -0.1
376,052 - GFF2692 0.75 -0.1
376,179 + +0.1

Or see this region's nucleotide sequence