Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF267 and GFF268 are separated by 159 nucleotides GFF268 and GFF269 are separated by 59 nucleotides GFF269 and GFF270 are separated by 180 nucleotides
GFF267 - (R)-citramalate synthase, at 281,638 to 283,251
GFF267
GFF268 - hypothetical protein, at 283,411 to 283,857
GFF268
GFF269 - Acetyl-CoA:oxalate CoA-transferase, at 283,917 to 285,092
GFF269
GFF270 - Acyl-CoA dehydrogenase, at 285,273 to 286,466
GFF270
Position (kb) 283
284
285
286 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 283.033 kb on + strand, within GFF267 at 283.034 kb on - strand, within GFF267 at 283.069 kb on + strand, within GFF267 at 283.069 kb on + strand, within GFF267 at 283.070 kb on - strand, within GFF267 at 283.070 kb on - strand, within GFF267 at 283.383 kb on - strand at 283.414 kb on + strand at 283.639 kb on + strand, within GFF268 at 283.639 kb on + strand, within GFF268 at 283.639 kb on + strand, within GFF268 at 283.639 kb on + strand, within GFF268 at 283.640 kb on - strand, within GFF268 at 283.640 kb on - strand, within GFF268 at 283.640 kb on - strand, within GFF268 at 283.640 kb on - strand, within GFF268 at 283.640 kb on - strand, within GFF268 at 283.681 kb on + strand, within GFF268 at 283.699 kb on + strand, within GFF268 at 283.700 kb on - strand, within GFF268 at 283.738 kb on + strand, within GFF268 at 283.738 kb on + strand, within GFF268 at 283.739 kb on - strand, within GFF268 at 284.257 kb on + strand, within GFF269 at 284.257 kb on + strand, within GFF269 at 284.431 kb on + strand, within GFF269 at 284.431 kb on + strand, within GFF269 at 284.431 kb on + strand, within GFF269 at 284.431 kb on + strand, within GFF269 at 284.431 kb on + strand, within GFF269 at 284.432 kb on - strand, within GFF269 at 284.432 kb on - strand, within GFF269 at 284.432 kb on - strand, within GFF269 at 284.432 kb on - strand, within GFF269 at 284.432 kb on - strand, within GFF269 at 284.432 kb on - strand, within GFF269 at 284.432 kb on - strand, within GFF269 at 284.551 kb on + strand, within GFF269 at 284.551 kb on + strand, within GFF269 at 284.659 kb on + strand, within GFF269 at 284.659 kb on + strand, within GFF269 at 284.659 kb on + strand, within GFF269 at 284.659 kb on + strand, within GFF269 at 284.749 kb on + strand, within GFF269 at 284.899 kb on + strand, within GFF269 at 284.900 kb on - strand, within GFF269 at 285.185 kb on + strand at 285.343 kb on + strand at 285.343 kb on + strand at 285.343 kb on + strand at 285.343 kb on + strand at 285.343 kb on + strand at 285.344 kb on - strand at 285.344 kb on - strand at 285.578 kb on - strand, within GFF270 at 285.638 kb on - strand, within GFF270 at 285.655 kb on + strand, within GFF270 at 286.091 kb on - strand, within GFF270
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 283,033 + GFF267 0.86 +0.0 283,034 - GFF267 0.86 -1.0 283,069 + GFF267 0.89 -1.4 283,069 + GFF267 0.89 +0.5 283,070 - GFF267 0.89 -1.2 283,070 - GFF267 0.89 +0.4 283,383 - +0.9 283,414 + +0.2 283,639 + GFF268 0.51 -0.0 283,639 + GFF268 0.51 -0.3 283,639 + GFF268 0.51 -0.5 283,639 + GFF268 0.51 +0.8 283,640 - GFF268 0.51 -0.1 283,640 - GFF268 0.51 +0.6 283,640 - GFF268 0.51 +0.5 283,640 - GFF268 0.51 +0.1 283,640 - GFF268 0.51 -0.5 283,681 + GFF268 0.60 +0.4 283,699 + GFF268 0.64 +0.0 283,700 - GFF268 0.65 +0.6 283,738 + GFF268 0.73 +0.0 283,738 + GFF268 0.73 -0.5 283,739 - GFF268 0.73 +0.4 284,257 + GFF269 0.29 +0.3 284,257 + GFF269 0.29 -0.1 284,431 + GFF269 0.44 -0.0 284,431 + GFF269 0.44 +0.8 284,431 + GFF269 0.44 +0.2 284,431 + GFF269 0.44 -0.2 284,431 + GFF269 0.44 +0.2 284,432 - GFF269 0.44 -0.2 284,432 - GFF269 0.44 -2.1 284,432 - GFF269 0.44 +2.9 284,432 - GFF269 0.44 +0.7 284,432 - GFF269 0.44 -2.4 284,432 - GFF269 0.44 +1.8 284,432 - GFF269 0.44 +0.5 284,551 + GFF269 0.54 -0.9 284,551 + GFF269 0.54 -0.7 284,659 + GFF269 0.63 +0.4 284,659 + GFF269 0.63 +0.4 284,659 + GFF269 0.63 +0.9 284,659 + GFF269 0.63 -0.7 284,749 + GFF269 0.71 +0.5 284,899 + GFF269 0.84 +0.4 284,900 - GFF269 0.84 +0.8 285,185 + -0.7 285,343 + -1.3 285,343 + +0.6 285,343 + -1.3 285,343 + +0.9 285,343 + -1.0 285,344 - -0.3 285,344 - +0.4 285,578 - GFF270 0.26 +0.1 285,638 - GFF270 0.31 +1.0 285,655 + GFF270 0.32 +0.6 286,091 - GFF270 0.69 -0.5
Or see this region's nucleotide sequence