Strain Fitness in Xanthobacter sp. DMC5 around GFF2684

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2683 and GFF2684 are separated by 2 nucleotidesGFF2684 and GFF2685 overlap by 4 nucleotides GFF2683 - Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase, at 366,992 to 368,287 GFF2683 GFF2684 - CDP-paratose 2-epimerase, at 368,290 to 369,414 GFF2684 GFF2685 - dTDP-L-rhamnose 4-epimerase, at 369,411 to 370,508 GFF2685 Position (kb) 368 369 370Strain fitness (log2 ratio) -2 -1 0 1 2at 367.296 kb on + strand, within GFF2683at 367.296 kb on + strand, within GFF2683at 367.297 kb on - strand, within GFF2683at 367.297 kb on - strand, within GFF2683at 367.474 kb on + strand, within GFF2683at 367.536 kb on + strand, within GFF2683at 367.537 kb on - strand, within GFF2683at 367.542 kb on + strand, within GFF2683at 367.543 kb on - strand, within GFF2683at 367.608 kb on + strand, within GFF2683at 367.608 kb on + strand, within GFF2683at 367.609 kb on - strand, within GFF2683at 367.650 kb on + strand, within GFF2683at 367.651 kb on - strand, within GFF2683at 367.651 kb on - strand, within GFF2683at 367.827 kb on + strand, within GFF2683at 367.828 kb on - strand, within GFF2683at 367.904 kb on + strand, within GFF2683at 367.904 kb on + strand, within GFF2683at 367.904 kb on + strand, within GFF2683at 367.905 kb on - strand, within GFF2683at 367.905 kb on - strand, within GFF2683at 367.905 kb on - strand, within GFF2683at 367.905 kb on - strand, within GFF2683at 367.905 kb on - strand, within GFF2683at 367.924 kb on + strand, within GFF2683at 367.924 kb on + strand, within GFF2683at 367.925 kb on - strand, within GFF2683at 368.055 kb on + strand, within GFF2683at 368.055 kb on + strand, within GFF2683at 368.056 kb on - strand, within GFF2683at 368.082 kb on - strand, within GFF2683at 368.114 kb on + strand, within GFF2683at 368.114 kb on + strand, within GFF2683at 368.114 kb on + strand, within GFF2683at 368.114 kb on + strand, within GFF2683at 368.115 kb on - strand, within GFF2683at 368.117 kb on + strand, within GFF2683at 368.117 kb on + strand, within GFF2683at 368.117 kb on + strand, within GFF2683at 368.117 kb on + strand, within GFF2683at 368.117 kb on + strand, within GFF2683at 368.117 kb on + strand, within GFF2683at 368.117 kb on + strand, within GFF2683at 368.117 kb on + strand, within GFF2683at 368.118 kb on - strand, within GFF2683at 368.118 kb on - strand, within GFF2683at 368.118 kb on - strand, within GFF2683at 368.238 kb on + strandat 368.238 kb on + strandat 368.238 kb on + strandat 368.239 kb on - strandat 368.270 kb on + strandat 368.270 kb on + strandat 368.271 kb on - strandat 368.435 kb on + strand, within GFF2684at 368.435 kb on + strand, within GFF2684at 368.435 kb on + strand, within GFF2684at 368.435 kb on + strand, within GFF2684at 368.435 kb on + strand, within GFF2684at 368.436 kb on - strand, within GFF2684at 368.436 kb on - strand, within GFF2684at 368.436 kb on - strand, within GFF2684at 368.436 kb on - strand, within GFF2684at 368.436 kb on - strand, within GFF2684at 368.438 kb on + strand, within GFF2684at 368.438 kb on + strand, within GFF2684at 368.439 kb on - strand, within GFF2684at 368.439 kb on - strand, within GFF2684at 368.439 kb on - strand, within GFF2684at 368.606 kb on + strand, within GFF2684at 368.606 kb on + strand, within GFF2684at 368.606 kb on + strand, within GFF2684at 368.606 kb on + strand, within GFF2684at 368.606 kb on + strand, within GFF2684at 368.606 kb on + strand, within GFF2684at 368.606 kb on + strand, within GFF2684at 368.607 kb on - strand, within GFF2684at 368.607 kb on - strand, within GFF2684at 368.607 kb on - strand, within GFF2684at 368.670 kb on + strand, within GFF2684at 368.670 kb on + strand, within GFF2684at 368.670 kb on + strand, within GFF2684at 368.670 kb on + strand, within GFF2684at 368.750 kb on + strand, within GFF2684at 368.750 kb on + strand, within GFF2684at 368.750 kb on + strand, within GFF2684at 368.750 kb on + strand, within GFF2684at 368.750 kb on + strand, within GFF2684at 368.750 kb on + strand, within GFF2684at 368.751 kb on - strand, within GFF2684at 368.751 kb on - strand, within GFF2684at 368.751 kb on - strand, within GFF2684at 368.751 kb on - strand, within GFF2684at 368.751 kb on - strand, within GFF2684at 368.751 kb on - strand, within GFF2684at 368.751 kb on - strand, within GFF2684at 368.751 kb on - strand, within GFF2684at 368.751 kb on - strand, within GFF2684at 368.801 kb on + strand, within GFF2684at 368.801 kb on + strand, within GFF2684at 368.802 kb on - strand, within GFF2684at 368.802 kb on - strand, within GFF2684at 368.813 kb on + strand, within GFF2684at 368.813 kb on + strand, within GFF2684at 368.813 kb on + strand, within GFF2684at 368.813 kb on + strand, within GFF2684at 368.813 kb on + strand, within GFF2684at 368.814 kb on - strand, within GFF2684at 368.814 kb on - strand, within GFF2684at 368.814 kb on - strand, within GFF2684at 368.814 kb on - strand, within GFF2684at 368.843 kb on + strand, within GFF2684at 368.843 kb on + strand, within GFF2684at 368.843 kb on + strand, within GFF2684at 368.843 kb on + strand, within GFF2684at 368.844 kb on - strand, within GFF2684at 368.844 kb on - strand, within GFF2684at 368.960 kb on + strand, within GFF2684at 368.960 kb on + strand, within GFF2684at 368.960 kb on + strand, within GFF2684at 368.961 kb on - strand, within GFF2684at 368.961 kb on - strand, within GFF2684at 369.364 kb on - strandat 369.417 kb on + strandat 369.417 kb on + strandat 369.417 kb on + strandat 369.417 kb on + strandat 369.417 kb on + strandat 369.418 kb on - strandat 369.599 kb on - strand, within GFF2685at 369.599 kb on - strand, within GFF2685at 369.692 kb on + strand, within GFF2685at 369.692 kb on + strand, within GFF2685at 369.692 kb on + strand, within GFF2685at 369.692 kb on + strand, within GFF2685at 369.693 kb on - strand, within GFF2685at 369.693 kb on - strand, within GFF2685at 369.695 kb on + strand, within GFF2685at 369.695 kb on + strand, within GFF2685at 369.695 kb on + strand, within GFF2685at 369.696 kb on - strand, within GFF2685at 369.696 kb on - strand, within GFF2685at 369.696 kb on - strand, within GFF2685at 369.696 kb on - strand, within GFF2685at 369.696 kb on - strand, within GFF2685at 369.696 kb on - strand, within GFF2685at 369.697 kb on + strand, within GFF2685at 369.697 kb on + strand, within GFF2685at 369.698 kb on - strand, within GFF2685at 369.759 kb on + strand, within GFF2685at 369.759 kb on + strand, within GFF2685at 369.759 kb on + strand, within GFF2685at 369.759 kb on + strand, within GFF2685at 369.760 kb on - strand, within GFF2685at 369.760 kb on - strand, within GFF2685at 369.760 kb on - strand, within GFF2685at 369.855 kb on - strand, within GFF2685at 369.855 kb on - strand, within GFF2685at 369.856 kb on + strand, within GFF2685at 369.856 kb on + strand, within GFF2685at 369.886 kb on + strand, within GFF2685at 369.887 kb on - strand, within GFF2685at 369.926 kb on - strand, within GFF2685at 369.964 kb on + strand, within GFF2685at 369.964 kb on + strand, within GFF2685at 369.964 kb on + strand, within GFF2685at 369.964 kb on + strand, within GFF2685at 369.964 kb on + strand, within GFF2685at 369.964 kb on + strand, within GFF2685at 369.964 kb on + strand, within GFF2685at 369.964 kb on + strand, within GFF2685at 369.965 kb on - strand, within GFF2685at 369.965 kb on - strand, within GFF2685at 369.965 kb on - strand, within GFF2685at 369.979 kb on + strand, within GFF2685at 369.979 kb on + strand, within GFF2685at 369.980 kb on - strand, within GFF2685at 370.123 kb on + strand, within GFF2685at 370.124 kb on - strand, within GFF2685at 370.138 kb on + strand, within GFF2685at 370.138 kb on + strand, within GFF2685at 370.138 kb on + strand, within GFF2685at 370.138 kb on + strand, within GFF2685at 370.138 kb on + strand, within GFF2685at 370.139 kb on - strand, within GFF2685at 370.139 kb on - strand, within GFF2685at 370.139 kb on - strand, within GFF2685at 370.139 kb on - strand, within GFF2685at 370.139 kb on - strand, within GFF2685at 370.234 kb on + strand, within GFF2685at 370.235 kb on - strand, within GFF2685at 370.235 kb on - strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.250 kb on - strand, within GFF2685at 370.250 kb on - strand, within GFF2685at 370.250 kb on - strand, within GFF2685at 370.250 kb on - strand, within GFF2685at 370.250 kb on - strand, within GFF2685at 370.250 kb on - strand, within GFF2685at 370.250 kb on - strand, within GFF2685at 370.250 kb on - strand, within GFF2685at 370.250 kb on - strand, within GFF2685

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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367,296 + GFF2683 0.23 -1.0
367,296 + GFF2683 0.23 -0.0
367,297 - GFF2683 0.24 +1.9
367,297 - GFF2683 0.24 +0.2
367,474 + GFF2683 0.37 -0.3
367,536 + GFF2683 0.42 -0.3
367,537 - GFF2683 0.42 -0.3
367,542 + GFF2683 0.42 -0.1
367,543 - GFF2683 0.43 +0.9
367,608 + GFF2683 0.48 -0.7
367,608 + GFF2683 0.48 +0.6
367,609 - GFF2683 0.48 +0.2
367,650 + GFF2683 0.51 +0.7
367,651 - GFF2683 0.51 -0.0
367,651 - GFF2683 0.51 +0.1
367,827 + GFF2683 0.64 -0.4
367,828 - GFF2683 0.65 +0.6
367,904 + GFF2683 0.70 -0.8
367,904 + GFF2683 0.70 +0.2
367,904 + GFF2683 0.70 +0.3
367,905 - GFF2683 0.70 -0.3
367,905 - GFF2683 0.70 -0.4
367,905 - GFF2683 0.70 -0.9
367,905 - GFF2683 0.70 +0.8
367,905 - GFF2683 0.70 +0.9
367,924 + GFF2683 0.72 +0.5
367,924 + GFF2683 0.72 +0.2
367,925 - GFF2683 0.72 -1.5
368,055 + GFF2683 0.82 +0.1
368,055 + GFF2683 0.82 +0.7
368,056 - GFF2683 0.82 +0.8
368,082 - GFF2683 0.84 +0.7
368,114 + GFF2683 0.87 -0.9
368,114 + GFF2683 0.87 +1.6
368,114 + GFF2683 0.87 +0.3
368,114 + GFF2683 0.87 +0.7
368,115 - GFF2683 0.87 +0.4
368,117 + GFF2683 0.87 +0.9
368,117 + GFF2683 0.87 -0.4
368,117 + GFF2683 0.87 -1.0
368,117 + GFF2683 0.87 -0.1
368,117 + GFF2683 0.87 -0.4
368,117 + GFF2683 0.87 -0.5
368,117 + GFF2683 0.87 +0.5
368,117 + GFF2683 0.87 -0.6
368,118 - GFF2683 0.87 -0.1
368,118 - GFF2683 0.87 +0.9
368,118 - GFF2683 0.87 +0.1
368,238 + -0.6
368,238 + -1.3
368,238 + +0.0
368,239 - +0.2
368,270 + -0.2
368,270 + -1.0
368,271 - -0.9
368,435 + GFF2684 0.13 -0.8
368,435 + GFF2684 0.13 -0.5
368,435 + GFF2684 0.13 -0.5
368,435 + GFF2684 0.13 -0.3
368,435 + GFF2684 0.13 -0.3
368,436 - GFF2684 0.13 -0.3
368,436 - GFF2684 0.13 -0.2
368,436 - GFF2684 0.13 -0.3
368,436 - GFF2684 0.13 +0.3
368,436 - GFF2684 0.13 +0.1
368,438 + GFF2684 0.13 +0.2
368,438 + GFF2684 0.13 -1.8
368,439 - GFF2684 0.13 +0.4
368,439 - GFF2684 0.13 -1.4
368,439 - GFF2684 0.13 -0.1
368,606 + GFF2684 0.28 +0.2
368,606 + GFF2684 0.28 -0.6
368,606 + GFF2684 0.28 -0.4
368,606 + GFF2684 0.28 -0.4
368,606 + GFF2684 0.28 -0.2
368,606 + GFF2684 0.28 -0.4
368,606 + GFF2684 0.28 +1.1
368,607 - GFF2684 0.28 +0.1
368,607 - GFF2684 0.28 -0.8
368,607 - GFF2684 0.28 +0.2
368,670 + GFF2684 0.34 +0.2
368,670 + GFF2684 0.34 -1.0
368,670 + GFF2684 0.34 +0.2
368,670 + GFF2684 0.34 +0.2
368,750 + GFF2684 0.41 -0.5
368,750 + GFF2684 0.41 +0.6
368,750 + GFF2684 0.41 +0.5
368,750 + GFF2684 0.41 +0.2
368,750 + GFF2684 0.41 +0.8
368,750 + GFF2684 0.41 -0.9
368,751 - GFF2684 0.41 -0.1
368,751 - GFF2684 0.41 -0.7
368,751 - GFF2684 0.41 +0.5
368,751 - GFF2684 0.41 -0.2
368,751 - GFF2684 0.41 -1.0
368,751 - GFF2684 0.41 -0.9
368,751 - GFF2684 0.41 +0.3
368,751 - GFF2684 0.41 +0.5
368,751 - GFF2684 0.41 +1.0
368,801 + GFF2684 0.45 -0.5
368,801 + GFF2684 0.45 -0.2
368,802 - GFF2684 0.46 +1.1
368,802 - GFF2684 0.46 +1.1
368,813 + GFF2684 0.46 -0.0
368,813 + GFF2684 0.46 +0.2
368,813 + GFF2684 0.46 +0.4
368,813 + GFF2684 0.46 -0.6
368,813 + GFF2684 0.46 +0.8
368,814 - GFF2684 0.47 +1.7
368,814 - GFF2684 0.47 -1.5
368,814 - GFF2684 0.47 +0.6
368,814 - GFF2684 0.47 +0.9
368,843 + GFF2684 0.49 -0.6
368,843 + GFF2684 0.49 -0.1
368,843 + GFF2684 0.49 +0.1
368,843 + GFF2684 0.49 +1.0
368,844 - GFF2684 0.49 +0.2
368,844 - GFF2684 0.49 -0.6
368,960 + GFF2684 0.60 +0.1
368,960 + GFF2684 0.60 +2.2
368,960 + GFF2684 0.60 +0.9
368,961 - GFF2684 0.60 +0.0
368,961 - GFF2684 0.60 -0.0
369,364 - +0.9
369,417 + -0.1
369,417 + -0.2
369,417 + -0.1
369,417 + -0.2
369,417 + +0.2
369,418 - +0.8
369,599 - GFF2685 0.17 -0.2
369,599 - GFF2685 0.17 -0.4
369,692 + GFF2685 0.26 -1.7
369,692 + GFF2685 0.26 -1.0
369,692 + GFF2685 0.26 -0.5
369,692 + GFF2685 0.26 -0.8
369,693 - GFF2685 0.26 +0.7
369,693 - GFF2685 0.26 +0.2
369,695 + GFF2685 0.26 +1.4
369,695 + GFF2685 0.26 -0.5
369,695 + GFF2685 0.26 +0.1
369,696 - GFF2685 0.26 -2.1
369,696 - GFF2685 0.26 -0.1
369,696 - GFF2685 0.26 +0.5
369,696 - GFF2685 0.26 +0.3
369,696 - GFF2685 0.26 -0.1
369,696 - GFF2685 0.26 +0.0
369,697 + GFF2685 0.26 -0.1
369,697 + GFF2685 0.26 -0.2
369,698 - GFF2685 0.26 +0.0
369,759 + GFF2685 0.32 +0.6
369,759 + GFF2685 0.32 -0.1
369,759 + GFF2685 0.32 -0.4
369,759 + GFF2685 0.32 -0.0
369,760 - GFF2685 0.32 +0.4
369,760 - GFF2685 0.32 -0.9
369,760 - GFF2685 0.32 -0.4
369,855 - GFF2685 0.40 +1.0
369,855 - GFF2685 0.40 -0.1
369,856 + GFF2685 0.41 -0.5
369,856 + GFF2685 0.41 -0.0
369,886 + GFF2685 0.43 -0.1
369,887 - GFF2685 0.43 -0.2
369,926 - GFF2685 0.47 +0.8
369,964 + GFF2685 0.50 +1.5
369,964 + GFF2685 0.50 -0.4
369,964 + GFF2685 0.50 -0.7
369,964 + GFF2685 0.50 +0.1
369,964 + GFF2685 0.50 +1.3
369,964 + GFF2685 0.50 -0.3
369,964 + GFF2685 0.50 -0.5
369,964 + GFF2685 0.50 -0.4
369,965 - GFF2685 0.50 -0.7
369,965 - GFF2685 0.50 -0.1
369,965 - GFF2685 0.50 -0.3
369,979 + GFF2685 0.52 -1.4
369,979 + GFF2685 0.52 +0.3
369,980 - GFF2685 0.52 -0.4
370,123 + GFF2685 0.65 +0.0
370,124 - GFF2685 0.65 +0.0
370,138 + GFF2685 0.66 +1.4
370,138 + GFF2685 0.66 +0.7
370,138 + GFF2685 0.66 +0.3
370,138 + GFF2685 0.66 +0.4
370,138 + GFF2685 0.66 +0.7
370,139 - GFF2685 0.66 -0.6
370,139 - GFF2685 0.66 -0.8
370,139 - GFF2685 0.66 +0.6
370,139 - GFF2685 0.66 -0.2
370,139 - GFF2685 0.66 -0.3
370,234 + GFF2685 0.75 +0.8
370,235 - GFF2685 0.75 -0.3
370,235 - GFF2685 0.75 +0.9
370,249 + GFF2685 0.76 -1.8
370,249 + GFF2685 0.76 -0.5
370,249 + GFF2685 0.76 +0.3
370,249 + GFF2685 0.76 +0.0
370,249 + GFF2685 0.76 -0.5
370,249 + GFF2685 0.76 -0.6
370,249 + GFF2685 0.76 -0.3
370,249 + GFF2685 0.76 -0.5
370,249 + GFF2685 0.76 -0.9
370,249 + GFF2685 0.76 -0.1
370,249 + GFF2685 0.76 -0.7
370,249 + GFF2685 0.76 +0.4
370,250 - GFF2685 0.76 +0.3
370,250 - GFF2685 0.76 -0.1
370,250 - GFF2685 0.76 -0.1
370,250 - GFF2685 0.76 -0.2
370,250 - GFF2685 0.76 -0.3
370,250 - GFF2685 0.76 -1.4
370,250 - GFF2685 0.76 -0.7
370,250 - GFF2685 0.76 +1.3
370,250 - GFF2685 0.76 -1.7

Or see this region's nucleotide sequence