Strain Fitness in Xanthobacter sp. DMC5 around GFF2683

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2682 and GFF2683 overlap by 19 nucleotidesGFF2683 and GFF2684 are separated by 2 nucleotides GFF2682 - D-inositol-3-phosphate glycosyltransferase, at 365,892 to 367,010 GFF2682 GFF2683 - Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase, at 366,992 to 368,287 GFF2683 GFF2684 - CDP-paratose 2-epimerase, at 368,290 to 369,414 GFF2684 Position (kb) 366 367 368 369Strain fitness (log2 ratio) -2 -1 0 1 2at 366.205 kb on + strand, within GFF2682at 366.206 kb on - strand, within GFF2682at 366.244 kb on + strand, within GFF2682at 366.244 kb on + strand, within GFF2682at 366.244 kb on + strand, within GFF2682at 366.245 kb on - strand, within GFF2682at 366.245 kb on - strand, within GFF2682at 366.506 kb on - strand, within GFF2682at 366.910 kb on - strandat 366.910 kb on - strandat 366.910 kb on - strandat 366.910 kb on - strandat 366.910 kb on - strandat 366.949 kb on + strandat 366.950 kb on - strandat 366.950 kb on - strandat 367.083 kb on + strandat 367.083 kb on + strandat 367.083 kb on + strandat 367.084 kb on - strandat 367.084 kb on - strandat 367.158 kb on + strand, within GFF2683at 367.296 kb on + strand, within GFF2683at 367.296 kb on + strand, within GFF2683at 367.297 kb on - strand, within GFF2683at 367.297 kb on - strand, within GFF2683at 367.474 kb on + strand, within GFF2683at 367.536 kb on + strand, within GFF2683at 367.537 kb on - strand, within GFF2683at 367.542 kb on + strand, within GFF2683at 367.543 kb on - strand, within GFF2683at 367.608 kb on + strand, within GFF2683at 367.608 kb on + strand, within GFF2683at 367.609 kb on - strand, within GFF2683at 367.650 kb on + strand, within GFF2683at 367.651 kb on - strand, within GFF2683at 367.651 kb on - strand, within GFF2683at 367.827 kb on + strand, within GFF2683at 367.828 kb on - strand, within GFF2683at 367.904 kb on + strand, within GFF2683at 367.904 kb on + strand, within GFF2683at 367.904 kb on + strand, within GFF2683at 367.905 kb on - strand, within GFF2683at 367.905 kb on - strand, within GFF2683at 367.905 kb on - strand, within GFF2683at 367.905 kb on - strand, within GFF2683at 367.905 kb on - strand, within GFF2683at 367.924 kb on + strand, within GFF2683at 367.924 kb on + strand, within GFF2683at 367.925 kb on - strand, within GFF2683at 368.055 kb on + strand, within GFF2683at 368.055 kb on + strand, within GFF2683at 368.056 kb on - strand, within GFF2683at 368.082 kb on - strand, within GFF2683at 368.114 kb on + strand, within GFF2683at 368.114 kb on + strand, within GFF2683at 368.114 kb on + strand, within GFF2683at 368.114 kb on + strand, within GFF2683at 368.115 kb on - strand, within GFF2683at 368.117 kb on + strand, within GFF2683at 368.117 kb on + strand, within GFF2683at 368.117 kb on + strand, within GFF2683at 368.117 kb on + strand, within GFF2683at 368.117 kb on + strand, within GFF2683at 368.117 kb on + strand, within GFF2683at 368.117 kb on + strand, within GFF2683at 368.117 kb on + strand, within GFF2683at 368.118 kb on - strand, within GFF2683at 368.118 kb on - strand, within GFF2683at 368.118 kb on - strand, within GFF2683at 368.238 kb on + strandat 368.238 kb on + strandat 368.238 kb on + strandat 368.239 kb on - strandat 368.270 kb on + strandat 368.270 kb on + strandat 368.271 kb on - strandat 368.435 kb on + strand, within GFF2684at 368.435 kb on + strand, within GFF2684at 368.435 kb on + strand, within GFF2684at 368.435 kb on + strand, within GFF2684at 368.435 kb on + strand, within GFF2684at 368.436 kb on - strand, within GFF2684at 368.436 kb on - strand, within GFF2684at 368.436 kb on - strand, within GFF2684at 368.436 kb on - strand, within GFF2684at 368.436 kb on - strand, within GFF2684at 368.438 kb on + strand, within GFF2684at 368.438 kb on + strand, within GFF2684at 368.439 kb on - strand, within GFF2684at 368.439 kb on - strand, within GFF2684at 368.439 kb on - strand, within GFF2684at 368.606 kb on + strand, within GFF2684at 368.606 kb on + strand, within GFF2684at 368.606 kb on + strand, within GFF2684at 368.606 kb on + strand, within GFF2684at 368.606 kb on + strand, within GFF2684at 368.606 kb on + strand, within GFF2684at 368.606 kb on + strand, within GFF2684at 368.607 kb on - strand, within GFF2684at 368.607 kb on - strand, within GFF2684at 368.607 kb on - strand, within GFF2684at 368.670 kb on + strand, within GFF2684at 368.670 kb on + strand, within GFF2684at 368.670 kb on + strand, within GFF2684at 368.670 kb on + strand, within GFF2684at 368.750 kb on + strand, within GFF2684at 368.750 kb on + strand, within GFF2684at 368.750 kb on + strand, within GFF2684at 368.750 kb on + strand, within GFF2684at 368.750 kb on + strand, within GFF2684at 368.750 kb on + strand, within GFF2684at 368.751 kb on - strand, within GFF2684at 368.751 kb on - strand, within GFF2684at 368.751 kb on - strand, within GFF2684at 368.751 kb on - strand, within GFF2684at 368.751 kb on - strand, within GFF2684at 368.751 kb on - strand, within GFF2684at 368.751 kb on - strand, within GFF2684at 368.751 kb on - strand, within GFF2684at 368.751 kb on - strand, within GFF2684at 368.801 kb on + strand, within GFF2684at 368.801 kb on + strand, within GFF2684at 368.802 kb on - strand, within GFF2684at 368.802 kb on - strand, within GFF2684at 368.813 kb on + strand, within GFF2684at 368.813 kb on + strand, within GFF2684at 368.813 kb on + strand, within GFF2684at 368.813 kb on + strand, within GFF2684at 368.813 kb on + strand, within GFF2684at 368.814 kb on - strand, within GFF2684at 368.814 kb on - strand, within GFF2684at 368.814 kb on - strand, within GFF2684at 368.814 kb on - strand, within GFF2684at 368.843 kb on + strand, within GFF2684at 368.843 kb on + strand, within GFF2684at 368.843 kb on + strand, within GFF2684at 368.843 kb on + strand, within GFF2684at 368.844 kb on - strand, within GFF2684at 368.844 kb on - strand, within GFF2684at 368.960 kb on + strand, within GFF2684at 368.960 kb on + strand, within GFF2684at 368.960 kb on + strand, within GFF2684at 368.961 kb on - strand, within GFF2684at 368.961 kb on - strand, within GFF2684

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
366,205 + GFF2682 0.28 -0.8
366,206 - GFF2682 0.28 -0.9
366,244 + GFF2682 0.31 -1.0
366,244 + GFF2682 0.31 +1.3
366,244 + GFF2682 0.31 -0.2
366,245 - GFF2682 0.32 +1.4
366,245 - GFF2682 0.32 +0.3
366,506 - GFF2682 0.55 +0.3
366,910 - +0.6
366,910 - -0.4
366,910 - +0.4
366,910 - -0.4
366,910 - +0.5
366,949 + -0.9
366,950 - -0.1
366,950 - +1.0
367,083 + -0.1
367,083 + +1.9
367,083 + -0.6
367,084 - -1.4
367,084 - -0.1
367,158 + GFF2683 0.13 +0.2
367,296 + GFF2683 0.23 -1.0
367,296 + GFF2683 0.23 -0.0
367,297 - GFF2683 0.24 +1.9
367,297 - GFF2683 0.24 +0.2
367,474 + GFF2683 0.37 -0.3
367,536 + GFF2683 0.42 -0.3
367,537 - GFF2683 0.42 -0.3
367,542 + GFF2683 0.42 -0.1
367,543 - GFF2683 0.43 +0.9
367,608 + GFF2683 0.48 -0.7
367,608 + GFF2683 0.48 +0.6
367,609 - GFF2683 0.48 +0.2
367,650 + GFF2683 0.51 +0.7
367,651 - GFF2683 0.51 -0.0
367,651 - GFF2683 0.51 +0.1
367,827 + GFF2683 0.64 -0.4
367,828 - GFF2683 0.65 +0.6
367,904 + GFF2683 0.70 -0.8
367,904 + GFF2683 0.70 +0.2
367,904 + GFF2683 0.70 +0.3
367,905 - GFF2683 0.70 -0.3
367,905 - GFF2683 0.70 -0.4
367,905 - GFF2683 0.70 -0.9
367,905 - GFF2683 0.70 +0.8
367,905 - GFF2683 0.70 +0.9
367,924 + GFF2683 0.72 +0.5
367,924 + GFF2683 0.72 +0.2
367,925 - GFF2683 0.72 -1.5
368,055 + GFF2683 0.82 +0.1
368,055 + GFF2683 0.82 +0.7
368,056 - GFF2683 0.82 +0.8
368,082 - GFF2683 0.84 +0.7
368,114 + GFF2683 0.87 -0.9
368,114 + GFF2683 0.87 +1.6
368,114 + GFF2683 0.87 +0.3
368,114 + GFF2683 0.87 +0.7
368,115 - GFF2683 0.87 +0.4
368,117 + GFF2683 0.87 +0.9
368,117 + GFF2683 0.87 -0.4
368,117 + GFF2683 0.87 -1.0
368,117 + GFF2683 0.87 -0.1
368,117 + GFF2683 0.87 -0.4
368,117 + GFF2683 0.87 -0.5
368,117 + GFF2683 0.87 +0.5
368,117 + GFF2683 0.87 -0.6
368,118 - GFF2683 0.87 -0.1
368,118 - GFF2683 0.87 +0.9
368,118 - GFF2683 0.87 +0.1
368,238 + -0.6
368,238 + -1.3
368,238 + +0.0
368,239 - +0.2
368,270 + -0.2
368,270 + -1.0
368,271 - -0.9
368,435 + GFF2684 0.13 -0.8
368,435 + GFF2684 0.13 -0.5
368,435 + GFF2684 0.13 -0.5
368,435 + GFF2684 0.13 -0.3
368,435 + GFF2684 0.13 -0.3
368,436 - GFF2684 0.13 -0.3
368,436 - GFF2684 0.13 -0.2
368,436 - GFF2684 0.13 -0.3
368,436 - GFF2684 0.13 +0.3
368,436 - GFF2684 0.13 +0.1
368,438 + GFF2684 0.13 +0.2
368,438 + GFF2684 0.13 -1.8
368,439 - GFF2684 0.13 +0.4
368,439 - GFF2684 0.13 -1.4
368,439 - GFF2684 0.13 -0.1
368,606 + GFF2684 0.28 +0.2
368,606 + GFF2684 0.28 -0.6
368,606 + GFF2684 0.28 -0.4
368,606 + GFF2684 0.28 -0.4
368,606 + GFF2684 0.28 -0.2
368,606 + GFF2684 0.28 -0.4
368,606 + GFF2684 0.28 +1.1
368,607 - GFF2684 0.28 +0.1
368,607 - GFF2684 0.28 -0.8
368,607 - GFF2684 0.28 +0.2
368,670 + GFF2684 0.34 +0.2
368,670 + GFF2684 0.34 -1.0
368,670 + GFF2684 0.34 +0.2
368,670 + GFF2684 0.34 +0.2
368,750 + GFF2684 0.41 -0.5
368,750 + GFF2684 0.41 +0.6
368,750 + GFF2684 0.41 +0.5
368,750 + GFF2684 0.41 +0.2
368,750 + GFF2684 0.41 +0.8
368,750 + GFF2684 0.41 -0.9
368,751 - GFF2684 0.41 -0.1
368,751 - GFF2684 0.41 -0.7
368,751 - GFF2684 0.41 +0.5
368,751 - GFF2684 0.41 -0.2
368,751 - GFF2684 0.41 -1.0
368,751 - GFF2684 0.41 -0.9
368,751 - GFF2684 0.41 +0.3
368,751 - GFF2684 0.41 +0.5
368,751 - GFF2684 0.41 +1.0
368,801 + GFF2684 0.45 -0.5
368,801 + GFF2684 0.45 -0.2
368,802 - GFF2684 0.46 +1.1
368,802 - GFF2684 0.46 +1.1
368,813 + GFF2684 0.46 -0.0
368,813 + GFF2684 0.46 +0.2
368,813 + GFF2684 0.46 +0.4
368,813 + GFF2684 0.46 -0.6
368,813 + GFF2684 0.46 +0.8
368,814 - GFF2684 0.47 +1.7
368,814 - GFF2684 0.47 -1.5
368,814 - GFF2684 0.47 +0.6
368,814 - GFF2684 0.47 +0.9
368,843 + GFF2684 0.49 -0.6
368,843 + GFF2684 0.49 -0.1
368,843 + GFF2684 0.49 +0.1
368,843 + GFF2684 0.49 +1.0
368,844 - GFF2684 0.49 +0.2
368,844 - GFF2684 0.49 -0.6
368,960 + GFF2684 0.60 +0.1
368,960 + GFF2684 0.60 +2.2
368,960 + GFF2684 0.60 +0.9
368,961 - GFF2684 0.60 +0.0
368,961 - GFF2684 0.60 -0.0

Or see this region's nucleotide sequence