Strain Fitness in Xanthobacter sp. DMC5 around GFF2679

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2678 and GFF2679 are separated by 17 nucleotidesGFF2679 and GFF2680 overlap by 4 nucleotides GFF2678 - UDP-glucose 4-epimerase, at 361,543 to 362,589 GFF2678 GFF2679 - hypothetical protein, at 362,607 to 363,698 GFF2679 GFF2680 - hypothetical protein, at 363,695 to 364,789 GFF2680 Position (kb) 362 363 364Strain fitness (log2 ratio) -2 -1 0 1 2at 361.713 kb on + strand, within GFF2678at 361.713 kb on + strand, within GFF2678at 361.714 kb on - strand, within GFF2678at 361.714 kb on - strand, within GFF2678at 361.716 kb on + strand, within GFF2678at 361.717 kb on - strand, within GFF2678at 361.913 kb on + strand, within GFF2678at 361.913 kb on + strand, within GFF2678at 361.913 kb on + strand, within GFF2678at 361.913 kb on + strand, within GFF2678at 361.914 kb on - strand, within GFF2678at 361.914 kb on - strand, within GFF2678at 361.914 kb on - strand, within GFF2678at 361.914 kb on - strand, within GFF2678at 361.946 kb on + strand, within GFF2678at 361.946 kb on + strand, within GFF2678at 361.947 kb on - strand, within GFF2678at 361.947 kb on - strand, within GFF2678at 361.947 kb on - strand, within GFF2678at 361.947 kb on - strand, within GFF2678at 361.947 kb on - strand, within GFF2678at 361.947 kb on - strand, within GFF2678at 361.947 kb on - strand, within GFF2678at 362.030 kb on + strand, within GFF2678at 362.031 kb on - strand, within GFF2678at 362.031 kb on - strand, within GFF2678at 362.031 kb on - strand, within GFF2678at 362.082 kb on - strand, within GFF2678at 362.112 kb on + strand, within GFF2678at 362.112 kb on + strand, within GFF2678at 362.123 kb on + strand, within GFF2678at 362.123 kb on + strand, within GFF2678at 362.124 kb on - strand, within GFF2678at 362.162 kb on + strand, within GFF2678at 362.162 kb on + strand, within GFF2678at 362.163 kb on - strand, within GFF2678at 362.198 kb on + strand, within GFF2678at 362.199 kb on - strand, within GFF2678at 362.292 kb on + strand, within GFF2678at 362.292 kb on + strand, within GFF2678at 362.292 kb on + strand, within GFF2678at 362.292 kb on + strand, within GFF2678at 362.292 kb on + strand, within GFF2678at 362.292 kb on + strand, within GFF2678at 362.292 kb on + strand, within GFF2678at 362.293 kb on - strand, within GFF2678at 362.293 kb on - strand, within GFF2678at 362.293 kb on - strand, within GFF2678at 362.293 kb on - strand, within GFF2678at 362.312 kb on + strand, within GFF2678at 362.351 kb on + strand, within GFF2678at 362.351 kb on + strand, within GFF2678at 362.351 kb on + strand, within GFF2678at 362.352 kb on - strand, within GFF2678at 362.352 kb on - strand, within GFF2678at 362.633 kb on + strandat 362.634 kb on - strandat 362.634 kb on - strandat 362.852 kb on + strand, within GFF2679at 362.852 kb on + strand, within GFF2679at 362.852 kb on + strand, within GFF2679at 362.852 kb on + strand, within GFF2679at 362.891 kb on + strand, within GFF2679at 362.891 kb on + strand, within GFF2679at 362.956 kb on + strand, within GFF2679at 362.956 kb on + strand, within GFF2679at 362.956 kb on + strand, within GFF2679at 362.956 kb on + strand, within GFF2679at 362.956 kb on + strand, within GFF2679at 362.957 kb on - strand, within GFF2679at 362.957 kb on - strand, within GFF2679at 362.957 kb on - strand, within GFF2679at 362.997 kb on + strand, within GFF2679at 362.997 kb on + strand, within GFF2679at 362.998 kb on - strand, within GFF2679at 363.031 kb on + strand, within GFF2679at 363.124 kb on + strand, within GFF2679at 363.124 kb on + strand, within GFF2679at 363.124 kb on + strand, within GFF2679at 363.125 kb on - strand, within GFF2679at 363.125 kb on - strand, within GFF2679at 363.125 kb on - strand, within GFF2679at 363.148 kb on + strand, within GFF2679at 363.148 kb on + strand, within GFF2679at 363.156 kb on + strand, within GFF2679at 363.156 kb on + strand, within GFF2679at 363.157 kb on - strand, within GFF2679at 363.175 kb on + strand, within GFF2679at 363.176 kb on - strand, within GFF2679at 363.199 kb on + strand, within GFF2679at 363.275 kb on - strand, within GFF2679at 363.275 kb on - strand, within GFF2679at 363.311 kb on - strand, within GFF2679at 363.364 kb on + strand, within GFF2679at 363.364 kb on + strand, within GFF2679at 363.365 kb on - strand, within GFF2679at 363.365 kb on - strand, within GFF2679at 363.430 kb on + strand, within GFF2679at 363.430 kb on + strand, within GFF2679at 363.430 kb on + strand, within GFF2679at 363.430 kb on + strand, within GFF2679at 363.430 kb on + strand, within GFF2679at 363.430 kb on + strand, within GFF2679at 363.431 kb on - strand, within GFF2679at 363.431 kb on - strand, within GFF2679at 363.431 kb on - strand, within GFF2679at 363.431 kb on - strand, within GFF2679at 363.431 kb on - strand, within GFF2679at 363.431 kb on - strand, within GFF2679at 363.431 kb on - strand, within GFF2679at 363.553 kb on + strand, within GFF2679at 363.553 kb on + strand, within GFF2679at 363.604 kb on + strandat 363.605 kb on - strandat 363.605 kb on - strandat 363.605 kb on - strandat 363.605 kb on - strandat 363.771 kb on + strandat 363.771 kb on + strandat 363.771 kb on + strandat 363.772 kb on - strandat 363.772 kb on - strandat 363.772 kb on - strandat 363.772 kb on - strandat 364.068 kb on + strand, within GFF2680at 364.068 kb on + strand, within GFF2680at 364.069 kb on - strand, within GFF2680at 364.069 kb on - strand, within GFF2680at 364.069 kb on - strand, within GFF2680at 364.069 kb on - strand, within GFF2680at 364.069 kb on - strand, within GFF2680at 364.069 kb on - strand, within GFF2680at 364.290 kb on + strand, within GFF2680at 364.290 kb on + strand, within GFF2680at 364.291 kb on - strand, within GFF2680at 364.291 kb on - strand, within GFF2680at 364.291 kb on - strand, within GFF2680at 364.326 kb on + strand, within GFF2680at 364.356 kb on + strand, within GFF2680at 364.356 kb on + strand, within GFF2680at 364.357 kb on - strand, within GFF2680at 364.357 kb on - strand, within GFF2680at 364.674 kb on + strand, within GFF2680at 364.674 kb on + strand, within GFF2680at 364.674 kb on + strand, within GFF2680at 364.674 kb on + strand, within GFF2680

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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361,713 + GFF2678 0.16 -0.7
361,713 + GFF2678 0.16 +0.2
361,714 - GFF2678 0.16 -0.9
361,714 - GFF2678 0.16 -0.3
361,716 + GFF2678 0.17 +0.2
361,717 - GFF2678 0.17 +0.9
361,913 + GFF2678 0.35 -0.6
361,913 + GFF2678 0.35 +1.1
361,913 + GFF2678 0.35 -0.5
361,913 + GFF2678 0.35 -1.1
361,914 - GFF2678 0.35 +1.1
361,914 - GFF2678 0.35 -1.3
361,914 - GFF2678 0.35 +0.8
361,914 - GFF2678 0.35 +0.2
361,946 + GFF2678 0.38 +0.1
361,946 + GFF2678 0.38 +0.3
361,947 - GFF2678 0.39 +0.5
361,947 - GFF2678 0.39 -0.8
361,947 - GFF2678 0.39 -0.3
361,947 - GFF2678 0.39 -0.6
361,947 - GFF2678 0.39 +0.1
361,947 - GFF2678 0.39 -0.1
361,947 - GFF2678 0.39 -0.6
362,030 + GFF2678 0.47 -0.5
362,031 - GFF2678 0.47 +0.5
362,031 - GFF2678 0.47 -1.0
362,031 - GFF2678 0.47 +0.2
362,082 - GFF2678 0.51 -0.3
362,112 + GFF2678 0.54 -0.7
362,112 + GFF2678 0.54 -0.3
362,123 + GFF2678 0.55 +0.7
362,123 + GFF2678 0.55 -0.8
362,124 - GFF2678 0.55 +0.6
362,162 + GFF2678 0.59 -0.1
362,162 + GFF2678 0.59 +0.3
362,163 - GFF2678 0.59 -1.3
362,198 + GFF2678 0.63 +0.0
362,199 - GFF2678 0.63 +0.6
362,292 + GFF2678 0.72 +1.0
362,292 + GFF2678 0.72 +0.9
362,292 + GFF2678 0.72 +0.4
362,292 + GFF2678 0.72 +0.0
362,292 + GFF2678 0.72 +0.2
362,292 + GFF2678 0.72 +1.2
362,292 + GFF2678 0.72 -0.7
362,293 - GFF2678 0.72 -0.5
362,293 - GFF2678 0.72 +0.5
362,293 - GFF2678 0.72 +0.4
362,293 - GFF2678 0.72 +0.7
362,312 + GFF2678 0.73 -0.2
362,351 + GFF2678 0.77 -0.2
362,351 + GFF2678 0.77 +0.0
362,351 + GFF2678 0.77 +1.6
362,352 - GFF2678 0.77 -0.6
362,352 - GFF2678 0.77 +0.8
362,633 + +0.4
362,634 - +0.9
362,634 - -0.2
362,852 + GFF2679 0.22 -1.1
362,852 + GFF2679 0.22 +0.2
362,852 + GFF2679 0.22 +0.0
362,852 + GFF2679 0.22 -0.2
362,891 + GFF2679 0.26 -0.3
362,891 + GFF2679 0.26 -0.0
362,956 + GFF2679 0.32 -0.7
362,956 + GFF2679 0.32 +0.4
362,956 + GFF2679 0.32 +0.4
362,956 + GFF2679 0.32 -0.2
362,956 + GFF2679 0.32 +0.6
362,957 - GFF2679 0.32 +0.5
362,957 - GFF2679 0.32 +0.1
362,957 - GFF2679 0.32 +0.5
362,997 + GFF2679 0.36 +0.3
362,997 + GFF2679 0.36 +0.1
362,998 - GFF2679 0.36 +0.3
363,031 + GFF2679 0.39 +0.2
363,124 + GFF2679 0.47 -0.3
363,124 + GFF2679 0.47 -1.7
363,124 + GFF2679 0.47 -0.7
363,125 - GFF2679 0.47 +0.1
363,125 - GFF2679 0.47 -1.7
363,125 - GFF2679 0.47 -0.0
363,148 + GFF2679 0.50 +0.5
363,148 + GFF2679 0.50 +1.2
363,156 + GFF2679 0.50 +0.4
363,156 + GFF2679 0.50 -0.1
363,157 - GFF2679 0.50 +0.5
363,175 + GFF2679 0.52 -0.3
363,176 - GFF2679 0.52 +0.3
363,199 + GFF2679 0.54 +0.8
363,275 - GFF2679 0.61 +0.8
363,275 - GFF2679 0.61 -0.2
363,311 - GFF2679 0.64 -0.6
363,364 + GFF2679 0.69 -0.7
363,364 + GFF2679 0.69 -0.1
363,365 - GFF2679 0.69 +0.2
363,365 - GFF2679 0.69 -1.0
363,430 + GFF2679 0.75 -0.2
363,430 + GFF2679 0.75 +0.7
363,430 + GFF2679 0.75 +1.9
363,430 + GFF2679 0.75 +0.4
363,430 + GFF2679 0.75 -0.1
363,430 + GFF2679 0.75 -0.8
363,431 - GFF2679 0.75 -0.0
363,431 - GFF2679 0.75 +0.0
363,431 - GFF2679 0.75 +1.1
363,431 - GFF2679 0.75 +0.7
363,431 - GFF2679 0.75 -0.4
363,431 - GFF2679 0.75 +1.0
363,431 - GFF2679 0.75 -1.1
363,553 + GFF2679 0.87 +0.9
363,553 + GFF2679 0.87 -0.1
363,604 + -0.6
363,605 - -0.4
363,605 - +0.9
363,605 - -0.2
363,605 - -0.0
363,771 + +0.2
363,771 + -0.3
363,771 + +0.6
363,772 - -0.4
363,772 - +0.5
363,772 - -0.7
363,772 - +0.4
364,068 + GFF2680 0.34 +0.0
364,068 + GFF2680 0.34 -0.9
364,069 - GFF2680 0.34 +0.7
364,069 - GFF2680 0.34 -0.1
364,069 - GFF2680 0.34 -0.2
364,069 - GFF2680 0.34 +0.4
364,069 - GFF2680 0.34 -0.3
364,069 - GFF2680 0.34 +0.6
364,290 + GFF2680 0.54 -0.1
364,290 + GFF2680 0.54 +0.1
364,291 - GFF2680 0.54 -0.2
364,291 - GFF2680 0.54 +0.3
364,291 - GFF2680 0.54 +0.3
364,326 + GFF2680 0.58 -0.6
364,356 + GFF2680 0.60 -0.4
364,356 + GFF2680 0.60 -0.8
364,357 - GFF2680 0.60 -0.2
364,357 - GFF2680 0.60 -1.0
364,674 + GFF2680 0.89 -0.1
364,674 + GFF2680 0.89 -1.6
364,674 + GFF2680 0.89 -0.8
364,674 + GFF2680 0.89 -2.0

Or see this region's nucleotide sequence