Strain Fitness in Xanthobacter sp. DMC5 around GFF2669

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2668 and GFF2669 are separated by 11 nucleotidesGFF2669 and GFF2670 are separated by 233 nucleotidesGFF2670 and GFF2671 are separated by 23 nucleotides GFF2668 - putative zinc-binding alcohol dehydrogenase, at 352,730 to 353,899 GFF2668 GFF2669 - NADH dehydrogenase-like protein, at 353,911 to 355,206 GFF2669 GFF2670 - Protein YciE, at 355,440 to 355,949 GFF2670 GFF2671 - putative manganese catalase, at 355,973 to 356,851 GFF2671 Position (kb) 353 354 355 356Strain fitness (log2 ratio) -2 -1 0 1at 353.030 kb on + strand, within GFF2668at 353.030 kb on + strand, within GFF2668at 353.030 kb on + strand, within GFF2668at 353.030 kb on + strand, within GFF2668at 353.031 kb on - strand, within GFF2668at 353.031 kb on - strand, within GFF2668at 353.031 kb on - strand, within GFF2668at 353.087 kb on + strand, within GFF2668at 353.111 kb on + strand, within GFF2668at 353.132 kb on + strand, within GFF2668at 353.133 kb on - strand, within GFF2668at 353.153 kb on + strand, within GFF2668at 353.154 kb on - strand, within GFF2668at 353.154 kb on - strand, within GFF2668at 353.154 kb on - strand, within GFF2668at 353.168 kb on + strand, within GFF2668at 353.169 kb on - strand, within GFF2668at 353.253 kb on - strand, within GFF2668at 353.278 kb on - strand, within GFF2668at 353.278 kb on - strand, within GFF2668at 353.278 kb on - strand, within GFF2668at 353.278 kb on - strand, within GFF2668at 353.380 kb on + strand, within GFF2668at 353.380 kb on + strand, within GFF2668at 353.380 kb on + strand, within GFF2668at 353.380 kb on + strand, within GFF2668at 353.380 kb on + strand, within GFF2668at 353.381 kb on - strand, within GFF2668at 353.453 kb on + strand, within GFF2668at 353.453 kb on + strand, within GFF2668at 353.453 kb on + strand, within GFF2668at 353.454 kb on - strand, within GFF2668at 353.454 kb on - strand, within GFF2668at 353.454 kb on - strand, within GFF2668at 353.454 kb on - strand, within GFF2668at 353.543 kb on + strand, within GFF2668at 353.543 kb on + strand, within GFF2668at 353.543 kb on + strand, within GFF2668at 353.543 kb on + strand, within GFF2668at 353.544 kb on - strand, within GFF2668at 353.544 kb on - strand, within GFF2668at 353.660 kb on + strand, within GFF2668at 353.660 kb on + strand, within GFF2668at 353.681 kb on + strand, within GFF2668at 353.739 kb on + strand, within GFF2668at 353.740 kb on - strand, within GFF2668at 353.748 kb on - strand, within GFF2668at 353.843 kb on + strandat 353.843 kb on + strandat 353.843 kb on + strandat 353.843 kb on + strandat 354.059 kb on - strand, within GFF2669at 354.059 kb on - strand, within GFF2669at 354.214 kb on + strand, within GFF2669at 354.253 kb on + strand, within GFF2669at 354.253 kb on + strand, within GFF2669at 354.254 kb on - strand, within GFF2669at 354.254 kb on - strand, within GFF2669at 354.317 kb on - strand, within GFF2669at 354.571 kb on + strand, within GFF2669at 354.571 kb on + strand, within GFF2669at 354.572 kb on - strand, within GFF2669at 354.731 kb on + strand, within GFF2669at 354.732 kb on - strand, within GFF2669at 354.735 kb on + strand, within GFF2669at 354.735 kb on + strand, within GFF2669at 354.736 kb on - strand, within GFF2669at 354.736 kb on - strand, within GFF2669at 354.819 kb on + strand, within GFF2669at 354.889 kb on + strand, within GFF2669at 354.889 kb on + strand, within GFF2669at 354.890 kb on - strand, within GFF2669at 354.890 kb on - strand, within GFF2669at 354.890 kb on - strand, within GFF2669at 355.001 kb on - strand, within GFF2669at 355.063 kb on + strand, within GFF2669at 355.063 kb on + strand, within GFF2669at 355.064 kb on - strand, within GFF2669at 355.121 kb on - strandat 355.121 kb on - strandat 355.121 kb on - strandat 355.121 kb on - strandat 355.121 kb on - strandat 355.166 kb on + strandat 355.315 kb on - strandat 355.335 kb on - strandat 355.335 kb on - strandat 355.338 kb on - strandat 355.339 kb on + strandat 355.360 kb on + strandat 355.445 kb on + strandat 355.445 kb on + strandat 355.445 kb on + strandat 355.446 kb on - strandat 355.548 kb on + strand, within GFF2670at 355.603 kb on + strand, within GFF2670at 355.603 kb on + strand, within GFF2670at 355.604 kb on - strand, within GFF2670at 355.604 kb on - strand, within GFF2670at 355.604 kb on - strand, within GFF2670at 355.604 kb on - strand, within GFF2670at 355.604 kb on - strand, within GFF2670at 355.604 kb on - strand, within GFF2670at 355.746 kb on + strand, within GFF2670at 355.746 kb on + strand, within GFF2670at 355.746 kb on + strand, within GFF2670at 355.747 kb on - strand, within GFF2670at 355.747 kb on - strand, within GFF2670at 355.747 kb on - strand, within GFF2670at 355.761 kb on + strand, within GFF2670at 355.777 kb on - strand, within GFF2670at 355.908 kb on + strandat 355.908 kb on + strandat 355.908 kb on + strandat 355.909 kb on - strandat 355.909 kb on - strandat 355.909 kb on - strandat 356.000 kb on + strandat 356.001 kb on - strandat 356.001 kb on - strandat 356.001 kb on - strandat 356.001 kb on - strandat 356.001 kb on - strandat 356.001 kb on - strandat 356.096 kb on + strand, within GFF2671at 356.096 kb on + strand, within GFF2671at 356.096 kb on + strand, within GFF2671at 356.096 kb on + strand, within GFF2671at 356.097 kb on - strand, within GFF2671at 356.097 kb on - strand, within GFF2671at 356.097 kb on - strand, within GFF2671at 356.097 kb on - strand, within GFF2671at 356.135 kb on + strand, within GFF2671at 356.135 kb on + strand, within GFF2671at 356.135 kb on + strand, within GFF2671at 356.136 kb on - strand, within GFF2671at 356.136 kb on - strand, within GFF2671

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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353,030 + GFF2668 0.26 +0.4
353,030 + GFF2668 0.26 -0.2
353,030 + GFF2668 0.26 -0.3
353,030 + GFF2668 0.26 -0.3
353,031 - GFF2668 0.26 +0.2
353,031 - GFF2668 0.26 +0.2
353,031 - GFF2668 0.26 +0.5
353,087 + GFF2668 0.31 -0.0
353,111 + GFF2668 0.33 -0.7
353,132 + GFF2668 0.34 +0.0
353,133 - GFF2668 0.34 +0.1
353,153 + GFF2668 0.36 -0.3
353,154 - GFF2668 0.36 +0.5
353,154 - GFF2668 0.36 +0.2
353,154 - GFF2668 0.36 -0.9
353,168 + GFF2668 0.37 +0.1
353,169 - GFF2668 0.38 +1.2
353,253 - GFF2668 0.45 +1.6
353,278 - GFF2668 0.47 +0.4
353,278 - GFF2668 0.47 +0.1
353,278 - GFF2668 0.47 +0.5
353,278 - GFF2668 0.47 -0.0
353,380 + GFF2668 0.56 -0.3
353,380 + GFF2668 0.56 +0.5
353,380 + GFF2668 0.56 +1.6
353,380 + GFF2668 0.56 +0.8
353,380 + GFF2668 0.56 -0.6
353,381 - GFF2668 0.56 -0.4
353,453 + GFF2668 0.62 -0.5
353,453 + GFF2668 0.62 +0.1
353,453 + GFF2668 0.62 +0.8
353,454 - GFF2668 0.62 -0.7
353,454 - GFF2668 0.62 +0.0
353,454 - GFF2668 0.62 -0.0
353,454 - GFF2668 0.62 +0.5
353,543 + GFF2668 0.69 -0.4
353,543 + GFF2668 0.69 +0.2
353,543 + GFF2668 0.69 -0.7
353,543 + GFF2668 0.69 -0.1
353,544 - GFF2668 0.70 -0.3
353,544 - GFF2668 0.70 +0.7
353,660 + GFF2668 0.79 -0.5
353,660 + GFF2668 0.79 -0.3
353,681 + GFF2668 0.81 +1.5
353,739 + GFF2668 0.86 -0.5
353,740 - GFF2668 0.86 -0.6
353,748 - GFF2668 0.87 +0.0
353,843 + -1.1
353,843 + -0.6
353,843 + -0.3
353,843 + -0.2
354,059 - GFF2669 0.11 -0.2
354,059 - GFF2669 0.11 -0.7
354,214 + GFF2669 0.23 -1.7
354,253 + GFF2669 0.26 +0.3
354,253 + GFF2669 0.26 -2.2
354,254 - GFF2669 0.26 -0.1
354,254 - GFF2669 0.26 -0.5
354,317 - GFF2669 0.31 -1.0
354,571 + GFF2669 0.51 -0.3
354,571 + GFF2669 0.51 -0.2
354,572 - GFF2669 0.51 -0.2
354,731 + GFF2669 0.63 +0.2
354,732 - GFF2669 0.63 +0.1
354,735 + GFF2669 0.64 +0.2
354,735 + GFF2669 0.64 -0.0
354,736 - GFF2669 0.64 +0.7
354,736 - GFF2669 0.64 +0.4
354,819 + GFF2669 0.70 -0.9
354,889 + GFF2669 0.75 +0.1
354,889 + GFF2669 0.75 +0.1
354,890 - GFF2669 0.76 -1.3
354,890 - GFF2669 0.76 -0.9
354,890 - GFF2669 0.76 +0.1
355,001 - GFF2669 0.84 -1.6
355,063 + GFF2669 0.89 -1.5
355,063 + GFF2669 0.89 -0.9
355,064 - GFF2669 0.89 -0.9
355,121 - -1.7
355,121 - -2.0
355,121 - -1.3
355,121 - -0.9
355,121 - +0.5
355,166 + -0.5
355,315 - -0.3
355,335 - -0.3
355,335 - -0.4
355,338 - +0.5
355,339 + +1.3
355,360 + +0.4
355,445 + -0.1
355,445 + +1.6
355,445 + -0.1
355,446 - -0.4
355,548 + GFF2670 0.21 -0.8
355,603 + GFF2670 0.32 -0.2
355,603 + GFF2670 0.32 +0.0
355,604 - GFF2670 0.32 -0.4
355,604 - GFF2670 0.32 -0.5
355,604 - GFF2670 0.32 -0.2
355,604 - GFF2670 0.32 +0.5
355,604 - GFF2670 0.32 +1.2
355,604 - GFF2670 0.32 -0.7
355,746 + GFF2670 0.60 +0.3
355,746 + GFF2670 0.60 +0.3
355,746 + GFF2670 0.60 -0.6
355,747 - GFF2670 0.60 +0.2
355,747 - GFF2670 0.60 -0.0
355,747 - GFF2670 0.60 +0.6
355,761 + GFF2670 0.63 +0.2
355,777 - GFF2670 0.66 -0.0
355,908 + -1.5
355,908 + -0.1
355,908 + -0.2
355,909 - +1.0
355,909 - -1.2
355,909 - -0.2
356,000 + -0.6
356,001 - +0.3
356,001 - +1.6
356,001 - -2.6
356,001 - -1.7
356,001 - -0.6
356,001 - -0.2
356,096 + GFF2671 0.14 +0.7
356,096 + GFF2671 0.14 +0.1
356,096 + GFF2671 0.14 -0.3
356,096 + GFF2671 0.14 +1.0
356,097 - GFF2671 0.14 -0.2
356,097 - GFF2671 0.14 -0.7
356,097 - GFF2671 0.14 -0.1
356,097 - GFF2671 0.14 +0.4
356,135 + GFF2671 0.18 +0.0
356,135 + GFF2671 0.18 -0.3
356,135 + GFF2671 0.18 +0.3
356,136 - GFF2671 0.19 -0.3
356,136 - GFF2671 0.19 -0.1

Or see this region's nucleotide sequence