Strain Fitness in Xanthobacter sp. DMC5 around GFF2568

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2567 and GFF2568 are separated by 16 nucleotidesGFF2568 and GFF2569 are separated by 105 nucleotidesGFF2569 and GFF2570 are separated by 50 nucleotides GFF2567 - hypothetical protein, at 238,060 to 239,286 GFF2567 GFF2568 - hypothetical protein, at 239,303 to 240,160 GFF2568 GFF2569 - hypothetical protein, at 240,266 to 240,895 GFF2569 GFF2570 - Protein translocase subunit SecA, at 240,946 to 243,726 GFF2570 Position (kb) 239 240 241Strain fitness (log2 ratio) -2 -1 0 1at 238.315 kb on + strand, within GFF2567at 238.315 kb on + strand, within GFF2567at 238.315 kb on + strand, within GFF2567at 238.315 kb on + strand, within GFF2567at 238.315 kb on + strand, within GFF2567at 238.315 kb on + strand, within GFF2567at 238.315 kb on + strand, within GFF2567at 238.316 kb on - strand, within GFF2567at 238.316 kb on - strand, within GFF2567at 238.316 kb on - strand, within GFF2567at 238.391 kb on - strand, within GFF2567at 238.391 kb on - strand, within GFF2567at 238.391 kb on - strand, within GFF2567at 238.391 kb on - strand, within GFF2567at 238.429 kb on + strand, within GFF2567at 238.429 kb on + strand, within GFF2567at 238.430 kb on - strand, within GFF2567at 238.432 kb on + strand, within GFF2567at 238.433 kb on - strand, within GFF2567at 238.433 kb on - strand, within GFF2567at 238.466 kb on - strand, within GFF2567at 238.478 kb on - strand, within GFF2567at 238.478 kb on - strand, within GFF2567at 238.478 kb on - strand, within GFF2567at 238.485 kb on + strand, within GFF2567at 238.485 kb on + strand, within GFF2567at 238.534 kb on + strand, within GFF2567at 238.534 kb on + strand, within GFF2567at 238.534 kb on + strand, within GFF2567at 238.534 kb on + strand, within GFF2567at 238.534 kb on + strand, within GFF2567at 238.624 kb on + strand, within GFF2567at 238.624 kb on + strand, within GFF2567at 238.625 kb on - strand, within GFF2567at 238.739 kb on + strand, within GFF2567at 238.765 kb on + strand, within GFF2567at 238.765 kb on + strand, within GFF2567at 238.766 kb on - strand, within GFF2567at 238.766 kb on - strand, within GFF2567at 238.828 kb on + strand, within GFF2567at 238.829 kb on - strand, within GFF2567at 239.005 kb on + strand, within GFF2567at 239.005 kb on + strand, within GFF2567at 239.006 kb on - strand, within GFF2567at 239.035 kb on + strand, within GFF2567at 239.035 kb on + strand, within GFF2567at 239.036 kb on - strand, within GFF2567at 239.036 kb on - strand, within GFF2567at 239.036 kb on - strand, within GFF2567at 239.036 kb on - strand, within GFF2567at 239.266 kb on - strandat 239.406 kb on - strand, within GFF2568at 239.431 kb on - strand, within GFF2568at 239.507 kb on + strand, within GFF2568at 239.507 kb on + strand, within GFF2568at 239.508 kb on - strand, within GFF2568at 239.508 kb on - strand, within GFF2568at 239.508 kb on - strand, within GFF2568at 239.712 kb on - strand, within GFF2568at 239.814 kb on - strand, within GFF2568at 239.933 kb on + strand, within GFF2568at 239.933 kb on + strand, within GFF2568at 239.933 kb on + strand, within GFF2568at 239.933 kb on + strand, within GFF2568at 239.933 kb on + strand, within GFF2568at 239.934 kb on - strand, within GFF2568at 239.934 kb on - strand, within GFF2568at 239.934 kb on - strand, within GFF2568at 239.934 kb on - strand, within GFF2568at 239.934 kb on - strand, within GFF2568at 239.934 kb on - strand, within GFF2568at 239.972 kb on + strand, within GFF2568at 239.973 kb on - strand, within GFF2568at 239.973 kb on - strand, within GFF2568at 239.984 kb on + strand, within GFF2568at 240.045 kb on - strand, within GFF2568at 240.050 kb on + strand, within GFF2568at 240.050 kb on + strand, within GFF2568at 240.051 kb on - strand, within GFF2568at 240.132 kb on - strandat 240.132 kb on - strandat 240.132 kb on - strandat 240.545 kb on + strand, within GFF2569at 240.546 kb on - strand, within GFF2569at 240.546 kb on - strand, within GFF2569at 240.546 kb on - strand, within GFF2569at 240.546 kb on - strand, within GFF2569at 240.546 kb on - strand, within GFF2569at 240.546 kb on - strand, within GFF2569at 240.546 kb on - strand, within GFF2569at 240.714 kb on - strand, within GFF2569at 240.755 kb on + strand, within GFF2569at 240.755 kb on + strand, within GFF2569at 240.755 kb on + strand, within GFF2569at 240.756 kb on - strand, within GFF2569at 240.756 kb on - strand, within GFF2569at 240.761 kb on + strand, within GFF2569at 240.975 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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238,315 + GFF2567 0.21 -1.5
238,315 + GFF2567 0.21 +0.7
238,315 + GFF2567 0.21 -0.4
238,315 + GFF2567 0.21 +0.3
238,315 + GFF2567 0.21 -0.8
238,315 + GFF2567 0.21 +1.1
238,315 + GFF2567 0.21 +0.3
238,316 - GFF2567 0.21 +1.2
238,316 - GFF2567 0.21 +1.3
238,316 - GFF2567 0.21 +0.5
238,391 - GFF2567 0.27 -0.5
238,391 - GFF2567 0.27 -0.3
238,391 - GFF2567 0.27 +1.1
238,391 - GFF2567 0.27 +1.3
238,429 + GFF2567 0.30 +0.3
238,429 + GFF2567 0.30 +0.8
238,430 - GFF2567 0.30 +0.9
238,432 + GFF2567 0.30 +1.4
238,433 - GFF2567 0.30 -0.9
238,433 - GFF2567 0.30 -0.7
238,466 - GFF2567 0.33 +0.2
238,478 - GFF2567 0.34 +0.1
238,478 - GFF2567 0.34 +0.6
238,478 - GFF2567 0.34 -0.6
238,485 + GFF2567 0.35 +0.9
238,485 + GFF2567 0.35 -1.1
238,534 + GFF2567 0.39 +0.1
238,534 + GFF2567 0.39 +1.4
238,534 + GFF2567 0.39 +0.0
238,534 + GFF2567 0.39 +0.4
238,534 + GFF2567 0.39 -0.8
238,624 + GFF2567 0.46 -0.0
238,624 + GFF2567 0.46 -0.6
238,625 - GFF2567 0.46 -0.3
238,739 + GFF2567 0.55 +0.1
238,765 + GFF2567 0.57 -0.7
238,765 + GFF2567 0.57 -1.8
238,766 - GFF2567 0.58 +0.1
238,766 - GFF2567 0.58 -1.3
238,828 + GFF2567 0.63 -0.3
238,829 - GFF2567 0.63 +0.2
239,005 + GFF2567 0.77 -0.0
239,005 + GFF2567 0.77 +0.6
239,006 - GFF2567 0.77 +0.5
239,035 + GFF2567 0.79 -0.5
239,035 + GFF2567 0.79 +0.4
239,036 - GFF2567 0.80 +0.6
239,036 - GFF2567 0.80 -0.1
239,036 - GFF2567 0.80 -0.1
239,036 - GFF2567 0.80 -1.1
239,266 - +0.3
239,406 - GFF2568 0.12 +0.8
239,431 - GFF2568 0.15 -0.0
239,507 + GFF2568 0.24 +0.5
239,507 + GFF2568 0.24 +0.6
239,508 - GFF2568 0.24 -0.1
239,508 - GFF2568 0.24 -0.5
239,508 - GFF2568 0.24 -1.5
239,712 - GFF2568 0.48 -0.2
239,814 - GFF2568 0.60 +0.0
239,933 + GFF2568 0.73 -0.3
239,933 + GFF2568 0.73 +0.9
239,933 + GFF2568 0.73 -1.5
239,933 + GFF2568 0.73 -0.0
239,933 + GFF2568 0.73 +0.7
239,934 - GFF2568 0.74 -0.7
239,934 - GFF2568 0.74 +0.3
239,934 - GFF2568 0.74 -0.3
239,934 - GFF2568 0.74 -0.5
239,934 - GFF2568 0.74 +0.5
239,934 - GFF2568 0.74 +0.2
239,972 + GFF2568 0.78 +0.5
239,973 - GFF2568 0.78 -1.4
239,973 - GFF2568 0.78 -0.5
239,984 + GFF2568 0.79 -0.9
240,045 - GFF2568 0.86 -0.3
240,050 + GFF2568 0.87 -0.4
240,050 + GFF2568 0.87 -0.9
240,051 - GFF2568 0.87 -0.1
240,132 - -0.5
240,132 - +0.6
240,132 - +0.0
240,545 + GFF2569 0.44 -0.4
240,546 - GFF2569 0.44 +0.6
240,546 - GFF2569 0.44 -0.2
240,546 - GFF2569 0.44 -0.1
240,546 - GFF2569 0.44 +1.1
240,546 - GFF2569 0.44 +0.8
240,546 - GFF2569 0.44 +0.2
240,546 - GFF2569 0.44 -1.2
240,714 - GFF2569 0.71 -0.4
240,755 + GFF2569 0.78 +0.1
240,755 + GFF2569 0.78 -0.0
240,755 + GFF2569 0.78 -0.8
240,756 - GFF2569 0.78 +0.4
240,756 - GFF2569 0.78 +0.2
240,761 + GFF2569 0.79 -0.5
240,975 - -0.6

Or see this region's nucleotide sequence