Strain Fitness in Xanthobacter sp. DMC5 around GFF2534

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2532 and GFF2533 are separated by 198 nucleotidesGFF2533 and GFF2534 are separated by 40 nucleotidesGFF2534 and GFF2535 are separated by 144 nucleotides GFF2532 - hypothetical protein, at 200,576 to 202,090 GFF2532 GFF2533 - HTH-type transcriptional repressor RspR, at 202,289 to 203,017 GFF2533 GFF2534 - Oxalyl-CoA decarboxylase, at 203,058 to 204,818 GFF2534 GFF2535 - Formyl-CoA:oxalate CoA-transferase, at 204,963 to 206,240 GFF2535 Position (kb) 203 204 205Strain fitness (log2 ratio) -2 -1 0 1at 202.089 kb on - strandat 202.129 kb on + strandat 202.351 kb on - strandat 202.351 kb on - strandat 202.351 kb on - strandat 202.391 kb on + strand, within GFF2533at 202.391 kb on + strand, within GFF2533at 202.392 kb on - strand, within GFF2533at 202.431 kb on - strand, within GFF2533at 202.431 kb on - strand, within GFF2533at 202.450 kb on - strand, within GFF2533at 202.743 kb on - strand, within GFF2533at 202.743 kb on - strand, within GFF2533at 203.015 kb on + strandat 203.016 kb on - strandat 203.016 kb on - strandat 203.016 kb on - strandat 203.016 kb on - strandat 203.046 kb on + strandat 203.047 kb on + strandat 203.047 kb on - strandat 203.047 kb on - strandat 203.047 kb on - strandat 203.047 kb on - strandat 203.063 kb on + strandat 203.193 kb on + strandat 203.193 kb on + strandat 203.193 kb on + strandat 203.193 kb on + strandat 203.194 kb on - strandat 203.194 kb on - strandat 203.467 kb on - strand, within GFF2534at 203.602 kb on - strand, within GFF2534at 203.602 kb on - strand, within GFF2534at 203.602 kb on - strand, within GFF2534at 204.345 kb on + strand, within GFF2534at 204.345 kb on + strand, within GFF2534at 204.345 kb on + strand, within GFF2534at 204.345 kb on + strand, within GFF2534at 204.345 kb on + strand, within GFF2534at 204.346 kb on - strand, within GFF2534at 204.346 kb on - strand, within GFF2534at 204.346 kb on - strand, within GFF2534at 204.346 kb on - strand, within GFF2534at 204.346 kb on - strand, within GFF2534at 204.346 kb on - strand, within GFF2534at 204.346 kb on - strand, within GFF2534at 204.552 kb on + strand, within GFF2534at 204.552 kb on + strand, within GFF2534at 204.553 kb on - strand, within GFF2534at 204.553 kb on - strand, within GFF2534at 204.622 kb on - strand, within GFF2534at 204.622 kb on - strand, within GFF2534at 204.684 kb on + strandat 204.742 kb on + strandat 204.905 kb on + strandat 204.906 kb on - strandat 204.916 kb on + strandat 204.948 kb on - strandat 204.959 kb on + strandat 204.959 kb on + strandat 204.959 kb on + strandat 204.960 kb on - strandat 204.960 kb on - strandat 204.960 kb on - strandat 204.960 kb on - strandat 204.977 kb on - strandat 204.977 kb on - strandat 204.977 kb on - strandat 205.138 kb on - strand, within GFF2535at 205.138 kb on - strand, within GFF2535at 205.138 kb on - strand, within GFF2535at 205.138 kb on - strand, within GFF2535at 205.138 kb on - strand, within GFF2535at 205.374 kb on + strand, within GFF2535at 205.374 kb on + strand, within GFF2535at 205.374 kb on + strand, within GFF2535at 205.375 kb on - strand, within GFF2535at 205.375 kb on - strand, within GFF2535at 205.375 kb on - strand, within GFF2535at 205.375 kb on - strand, within GFF2535at 205.375 kb on - strand, within GFF2535at 205.635 kb on + strand, within GFF2535at 205.635 kb on + strand, within GFF2535at 205.636 kb on - strand, within GFF2535at 205.758 kb on + strand, within GFF2535at 205.758 kb on + strand, within GFF2535at 205.758 kb on + strand, within GFF2535at 205.758 kb on + strand, within GFF2535at 205.758 kb on + strand, within GFF2535at 205.764 kb on + strand, within GFF2535at 205.764 kb on + strand, within GFF2535at 205.764 kb on + strand, within GFF2535at 205.764 kb on + strand, within GFF2535at 205.764 kb on + strand, within GFF2535at 205.764 kb on + strand, within GFF2535at 205.764 kb on + strand, within GFF2535at 205.764 kb on + strand, within GFF2535at 205.764 kb on + strand, within GFF2535at 205.764 kb on + strand, within GFF2535at 205.765 kb on - strand, within GFF2535at 205.765 kb on - strand, within GFF2535at 205.765 kb on - strand, within GFF2535at 205.765 kb on - strand, within GFF2535

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
202,089 - -0.6
202,129 + -0.6
202,351 - +0.7
202,351 - -0.7
202,351 - -0.3
202,391 + GFF2533 0.14 +0.5
202,391 + GFF2533 0.14 +0.6
202,392 - GFF2533 0.14 -1.7
202,431 - GFF2533 0.19 -0.3
202,431 - GFF2533 0.19 +0.2
202,450 - GFF2533 0.22 +0.1
202,743 - GFF2533 0.62 -0.3
202,743 - GFF2533 0.62 +0.0
203,015 + -0.5
203,016 - -0.1
203,016 - -0.5
203,016 - -0.5
203,016 - -0.2
203,046 + +1.2
203,047 + -0.3
203,047 - -0.3
203,047 - +0.7
203,047 - -0.1
203,047 - -0.0
203,063 + -1.0
203,193 + +0.6
203,193 + +0.1
203,193 + +0.6
203,193 + +0.1
203,194 - -0.3
203,194 - -0.1
203,467 - GFF2534 0.23 -1.0
203,602 - GFF2534 0.31 -0.0
203,602 - GFF2534 0.31 +0.2
203,602 - GFF2534 0.31 +0.8
204,345 + GFF2534 0.73 -0.8
204,345 + GFF2534 0.73 +0.7
204,345 + GFF2534 0.73 -0.2
204,345 + GFF2534 0.73 +1.4
204,345 + GFF2534 0.73 -0.3
204,346 - GFF2534 0.73 -1.2
204,346 - GFF2534 0.73 +0.7
204,346 - GFF2534 0.73 +0.2
204,346 - GFF2534 0.73 -0.1
204,346 - GFF2534 0.73 +0.0
204,346 - GFF2534 0.73 -1.0
204,346 - GFF2534 0.73 -0.2
204,552 + GFF2534 0.85 -0.8
204,552 + GFF2534 0.85 +0.3
204,553 - GFF2534 0.85 -1.3
204,553 - GFF2534 0.85 -0.1
204,622 - GFF2534 0.89 +0.3
204,622 - GFF2534 0.89 +0.3
204,684 + +0.4
204,742 + -0.3
204,905 + -0.3
204,906 - +0.3
204,916 + -0.2
204,948 - -0.0
204,959 + +0.2
204,959 + +0.4
204,959 + +1.0
204,960 - +0.7
204,960 - -0.8
204,960 - +0.7
204,960 - -0.2
204,977 - -0.3
204,977 - +0.5
204,977 - +0.6
205,138 - GFF2535 0.14 -0.8
205,138 - GFF2535 0.14 -0.5
205,138 - GFF2535 0.14 +0.2
205,138 - GFF2535 0.14 -0.2
205,138 - GFF2535 0.14 +1.2
205,374 + GFF2535 0.32 -2.0
205,374 + GFF2535 0.32 +1.6
205,374 + GFF2535 0.32 +0.4
205,375 - GFF2535 0.32 +0.7
205,375 - GFF2535 0.32 -0.1
205,375 - GFF2535 0.32 -1.2
205,375 - GFF2535 0.32 -0.3
205,375 - GFF2535 0.32 +0.4
205,635 + GFF2535 0.53 -1.1
205,635 + GFF2535 0.53 -0.7
205,636 - GFF2535 0.53 -0.6
205,758 + GFF2535 0.62 -0.4
205,758 + GFF2535 0.62 +0.1
205,758 + GFF2535 0.62 +1.5
205,758 + GFF2535 0.62 -0.1
205,758 + GFF2535 0.62 +0.5
205,764 + GFF2535 0.63 -0.6
205,764 + GFF2535 0.63 -0.8
205,764 + GFF2535 0.63 -0.5
205,764 + GFF2535 0.63 -0.5
205,764 + GFF2535 0.63 +0.2
205,764 + GFF2535 0.63 -2.6
205,764 + GFF2535 0.63 -0.8
205,764 + GFF2535 0.63 -1.2
205,764 + GFF2535 0.63 -0.7
205,764 + GFF2535 0.63 +0.4
205,765 - GFF2535 0.63 +0.7
205,765 - GFF2535 0.63 -0.5
205,765 - GFF2535 0.63 +0.3
205,765 - GFF2535 0.63 -1.0

Or see this region's nucleotide sequence