Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2512 and GFF2513 are separated by 4 nucleotides GFF2513 and GFF2514 are separated by 138 nucleotides GFF2514 and GFF2515 are separated by 295 nucleotides
GFF2512 - hypothetical protein, at 173,575 to 174,597
GFF2512
GFF2513 - Multidrug resistance protein MdtN, at 174,602 to 175,582
GFF2513
GFF2514 - hypothetical protein, at 175,721 to 176,014
GFF2514
GFF2515 - Alpha-ketoglutaric semialdehyde dehydrogenase 1, at 176,310 to 177,752
GFF2515
Position (kb) 174
175
176 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 173.772 kb on + strand, within GFF2512 at 173.774 kb on + strand, within GFF2512 at 173.774 kb on + strand, within GFF2512 at 173.774 kb on + strand, within GFF2512 at 173.774 kb on + strand, within GFF2512 at 173.774 kb on + strand, within GFF2512 at 173.774 kb on + strand, within GFF2512 at 173.775 kb on - strand, within GFF2512 at 173.775 kb on - strand, within GFF2512 at 173.775 kb on - strand, within GFF2512 at 173.775 kb on - strand, within GFF2512 at 173.775 kb on - strand, within GFF2512 at 173.775 kb on - strand, within GFF2512 at 173.775 kb on - strand, within GFF2512 at 173.814 kb on - strand, within GFF2512 at 173.843 kb on + strand, within GFF2512 at 173.843 kb on + strand, within GFF2512 at 173.844 kb on - strand, within GFF2512 at 173.844 kb on - strand, within GFF2512 at 174.272 kb on + strand, within GFF2512 at 174.273 kb on - strand, within GFF2512 at 174.285 kb on - strand, within GFF2512 at 174.311 kb on + strand, within GFF2512 at 174.639 kb on + strand at 174.639 kb on + strand at 174.729 kb on + strand, within GFF2513 at 174.729 kb on + strand, within GFF2513 at 174.729 kb on + strand, within GFF2513 at 174.730 kb on - strand, within GFF2513 at 174.777 kb on - strand, within GFF2513 at 174.943 kb on - strand, within GFF2513 at 174.983 kb on + strand, within GFF2513 at 174.984 kb on - strand, within GFF2513 at 175.017 kb on + strand, within GFF2513 at 175.017 kb on + strand, within GFF2513 at 175.017 kb on + strand, within GFF2513 at 175.018 kb on - strand, within GFF2513 at 175.153 kb on + strand, within GFF2513 at 175.154 kb on - strand, within GFF2513 at 175.307 kb on + strand, within GFF2513 at 175.470 kb on + strand, within GFF2513 at 175.470 kb on + strand, within GFF2513 at 175.470 kb on + strand, within GFF2513 at 175.470 kb on + strand, within GFF2513 at 175.470 kb on + strand, within GFF2513 at 175.470 kb on + strand, within GFF2513 at 175.470 kb on + strand, within GFF2513 at 175.471 kb on - strand, within GFF2513 at 175.486 kb on - strand at 175.512 kb on + strand at 175.512 kb on + strand at 175.512 kb on + strand at 175.513 kb on - strand at 175.517 kb on + strand at 175.517 kb on + strand at 175.645 kb on + strand at 175.658 kb on + strand at 175.942 kb on + strand, within GFF2514 at 175.942 kb on + strand, within GFF2514 at 175.942 kb on + strand, within GFF2514 at 175.943 kb on - strand, within GFF2514 at 176.126 kb on + strand at 176.126 kb on + strand at 176.126 kb on + strand at 176.127 kb on - strand at 176.127 kb on - strand at 176.127 kb on - strand at 176.297 kb on - strand at 176.323 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 173,772 + GFF2512 0.19 -0.7 173,774 + GFF2512 0.19 +0.9 173,774 + GFF2512 0.19 +0.3 173,774 + GFF2512 0.19 +1.0 173,774 + GFF2512 0.19 -0.2 173,774 + GFF2512 0.19 -0.6 173,774 + GFF2512 0.19 +0.0 173,775 - GFF2512 0.20 +0.3 173,775 - GFF2512 0.20 +1.0 173,775 - GFF2512 0.20 +0.9 173,775 - GFF2512 0.20 +1.6 173,775 - GFF2512 0.20 -0.9 173,775 - GFF2512 0.20 -0.7 173,775 - GFF2512 0.20 -0.2 173,814 - GFF2512 0.23 -0.8 173,843 + GFF2512 0.26 -1.0 173,843 + GFF2512 0.26 -0.5 173,844 - GFF2512 0.26 -1.0 173,844 - GFF2512 0.26 +1.4 174,272 + GFF2512 0.68 +0.7 174,273 - GFF2512 0.68 +1.0 174,285 - GFF2512 0.69 +1.8 174,311 + GFF2512 0.72 -0.7 174,639 + -1.2 174,639 + +0.8 174,729 + GFF2513 0.13 +0.2 174,729 + GFF2513 0.13 +0.4 174,729 + GFF2513 0.13 +0.8 174,730 - GFF2513 0.13 +0.7 174,777 - GFF2513 0.18 +0.3 174,943 - GFF2513 0.35 -0.3 174,983 + GFF2513 0.39 -0.2 174,984 - GFF2513 0.39 -2.3 175,017 + GFF2513 0.42 -1.6 175,017 + GFF2513 0.42 +0.3 175,017 + GFF2513 0.42 +0.6 175,018 - GFF2513 0.42 -1.4 175,153 + GFF2513 0.56 -3.1 175,154 - GFF2513 0.56 +0.0 175,307 + GFF2513 0.72 -1.0 175,470 + GFF2513 0.88 +0.0 175,470 + GFF2513 0.88 +0.5 175,470 + GFF2513 0.88 -0.3 175,470 + GFF2513 0.88 -1.2 175,470 + GFF2513 0.88 -0.1 175,470 + GFF2513 0.88 -0.1 175,470 + GFF2513 0.88 -0.6 175,471 - GFF2513 0.89 +0.7 175,486 - +0.5 175,512 + -1.0 175,512 + -0.9 175,512 + -0.5 175,513 - -0.1 175,517 + +0.1 175,517 + -0.5 175,645 + +0.3 175,658 + -0.4 175,942 + GFF2514 0.75 +0.4 175,942 + GFF2514 0.75 -0.4 175,942 + GFF2514 0.75 -0.3 175,943 - GFF2514 0.76 +0.4 176,126 + -0.6 176,126 + +0.3 176,126 + -0.3 176,127 - +0.7 176,127 - +0.6 176,127 - -1.2 176,297 - -0.4 176,323 - -0.7
Or see this region's nucleotide sequence