Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2506 and GFF2507 are separated by 1 nucleotides GFF2507 and GFF2508 are separated by 29 nucleotides GFF2508 and GFF2509 are separated by 161 nucleotides
GFF2506 - Lon protease 2, at 168,347 to 169,063
GFF2506
GFF2507 - hypothetical protein, at 169,065 to 169,412
GFF2507
GFF2508 - Ribosomal large subunit pseudouridine synthase D, at 169,442 to 170,512
GFF2508
GFF2509 - RNA polymerase sigma factor RpoH, at 170,674 to 171,570
GFF2509
Position (kb) 169
170
171 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 168.516 kb on - strand, within GFF2506 at 168.671 kb on + strand, within GFF2506 at 168.671 kb on + strand, within GFF2506 at 168.671 kb on + strand, within GFF2506 at 168.672 kb on - strand, within GFF2506 at 168.672 kb on - strand, within GFF2506 at 168.738 kb on - strand, within GFF2506 at 169.061 kb on + strand at 169.062 kb on - strand at 169.062 kb on - strand at 169.265 kb on - strand, within GFF2507 at 169.677 kb on + strand, within GFF2508 at 169.678 kb on - strand, within GFF2508 at 169.715 kb on + strand, within GFF2508 at 169.715 kb on + strand, within GFF2508 at 169.715 kb on + strand, within GFF2508 at 169.716 kb on - strand, within GFF2508 at 169.884 kb on - strand, within GFF2508 at 169.884 kb on - strand, within GFF2508 at 169.957 kb on + strand, within GFF2508 at 169.958 kb on - strand, within GFF2508 at 169.958 kb on - strand, within GFF2508 at 169.958 kb on - strand, within GFF2508 at 170.035 kb on + strand, within GFF2508 at 170.057 kb on + strand, within GFF2508 at 170.058 kb on - strand, within GFF2508 at 170.058 kb on - strand, within GFF2508 at 170.058 kb on - strand, within GFF2508 at 170.079 kb on + strand, within GFF2508 at 170.321 kb on + strand, within GFF2508 at 170.586 kb on + strand at 170.586 kb on + strand at 170.587 kb on - strand at 170.587 kb on - strand at 170.587 kb on - strand at 170.587 kb on - strand at 170.590 kb on + strand at 170.590 kb on + strand at 170.590 kb on + strand at 170.590 kb on + strand at 170.590 kb on + strand at 170.591 kb on - strand at 170.591 kb on - strand at 170.591 kb on - strand at 170.591 kb on - strand at 170.593 kb on - strand at 170.685 kb on + strand at 170.685 kb on + strand at 170.685 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 168,516 - GFF2506 0.24 -0.2 168,671 + GFF2506 0.45 -0.5 168,671 + GFF2506 0.45 -0.3 168,671 + GFF2506 0.45 +0.3 168,672 - GFF2506 0.45 -0.8 168,672 - GFF2506 0.45 -0.4 168,738 - GFF2506 0.55 -0.8 169,061 + -0.1 169,062 - +0.5 169,062 - +0.5 169,265 - GFF2507 0.57 +0.4 169,677 + GFF2508 0.22 -1.0 169,678 - GFF2508 0.22 -1.8 169,715 + GFF2508 0.25 -0.6 169,715 + GFF2508 0.25 -1.0 169,715 + GFF2508 0.25 +0.5 169,716 - GFF2508 0.26 -1.2 169,884 - GFF2508 0.41 -0.8 169,884 - GFF2508 0.41 +0.5 169,957 + GFF2508 0.48 +0.8 169,958 - GFF2508 0.48 -0.1 169,958 - GFF2508 0.48 -1.5 169,958 - GFF2508 0.48 -1.6 170,035 + GFF2508 0.55 +0.6 170,057 + GFF2508 0.57 +0.5 170,058 - GFF2508 0.58 -0.6 170,058 - GFF2508 0.58 -0.1 170,058 - GFF2508 0.58 -0.1 170,079 + GFF2508 0.59 -1.1 170,321 + GFF2508 0.82 -1.5 170,586 + +1.0 170,586 + -0.8 170,587 - +0.2 170,587 - -0.3 170,587 - -0.5 170,587 - -0.3 170,590 + +0.6 170,590 + +0.8 170,590 + -0.8 170,590 + -0.1 170,590 + -2.8 170,591 - +0.4 170,591 - -0.1 170,591 - -0.5 170,591 - -0.6 170,593 - +0.6 170,685 + -0.8 170,685 + -1.0 170,685 + +0.1
Or see this region's nucleotide sequence