Strain Fitness in Xanthobacter sp. DMC5 around GFF250

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF249 and GFF250 are separated by 233 nucleotidesGFF250 and GFF251 are separated by 188 nucleotides GFF249 - Acetone carboxylase alpha subunit, at 261,774 to 264,104 GFF249 GFF250 - Acetone carboxylase gamma subunit, at 264,338 to 264,844 GFF250 GFF251 - Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ, at 265,033 to 265,896 GFF251 Position (kb) 264 265Strain fitness (log2 ratio) -2 -1 0 1 2at 263.616 kb on + strand, within GFF249at 263.616 kb on + strand, within GFF249at 263.617 kb on - strand, within GFF249at 263.626 kb on - strand, within GFF249at 263.634 kb on + strand, within GFF249at 263.634 kb on + strand, within GFF249at 263.634 kb on + strand, within GFF249at 263.634 kb on + strand, within GFF249at 263.634 kb on + strand, within GFF249at 263.635 kb on - strand, within GFF249at 263.635 kb on - strand, within GFF249at 263.635 kb on - strand, within GFF249at 263.742 kb on + strand, within GFF249at 263.743 kb on - strand, within GFF249at 264.033 kb on + strandat 264.033 kb on + strandat 264.033 kb on + strandat 264.033 kb on + strandat 264.033 kb on + strandat 264.033 kb on + strandat 264.033 kb on + strandat 264.034 kb on - strandat 264.046 kb on - strandat 264.112 kb on + strandat 264.112 kb on + strandat 264.112 kb on + strandat 264.113 kb on - strandat 264.268 kb on - strandat 264.268 kb on - strandat 264.268 kb on - strandat 264.344 kb on + strandat 264.344 kb on + strandat 264.344 kb on + strandat 264.344 kb on + strandat 264.344 kb on + strandat 264.345 kb on - strandat 264.345 kb on - strandat 264.345 kb on - strandat 264.345 kb on - strandat 264.345 kb on - strandat 264.345 kb on - strandat 264.446 kb on + strand, within GFF250at 264.446 kb on + strand, within GFF250at 264.447 kb on - strand, within GFF250at 264.447 kb on - strand, within GFF250at 264.447 kb on - strand, within GFF250at 264.447 kb on - strand, within GFF250at 264.447 kb on - strand, within GFF250at 264.447 kb on - strand, within GFF250at 264.447 kb on - strand, within GFF250at 264.653 kb on + strand, within GFF250at 264.701 kb on + strand, within GFF250at 264.701 kb on + strand, within GFF250at 264.902 kb on + strandat 265.054 kb on - strandat 265.054 kb on - strandat 265.054 kb on - strandat 265.054 kb on - strandat 265.135 kb on + strand, within GFF251at 265.135 kb on + strand, within GFF251at 265.135 kb on + strand, within GFF251at 265.135 kb on + strand, within GFF251at 265.136 kb on - strand, within GFF251at 265.136 kb on - strand, within GFF251at 265.136 kb on - strand, within GFF251at 265.225 kb on + strand, within GFF251at 265.225 kb on + strand, within GFF251at 265.226 kb on - strand, within GFF251at 265.226 kb on - strand, within GFF251at 265.226 kb on - strand, within GFF251at 265.226 kb on - strand, within GFF251at 265.229 kb on + strand, within GFF251at 265.500 kb on + strand, within GFF251at 265.550 kb on + strand, within GFF251at 265.550 kb on + strand, within GFF251at 265.550 kb on + strand, within GFF251at 265.551 kb on - strand, within GFF251at 265.551 kb on - strand, within GFF251at 265.551 kb on - strand, within GFF251at 265.597 kb on + strand, within GFF251at 265.604 kb on + strand, within GFF251at 265.605 kb on - strand, within GFF251at 265.605 kb on - strand, within GFF251at 265.667 kb on + strand, within GFF251

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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263,616 + GFF249 0.79 -0.2
263,616 + GFF249 0.79 +0.7
263,617 - GFF249 0.79 +2.0
263,626 - GFF249 0.79 -0.4
263,634 + GFF249 0.80 -0.2
263,634 + GFF249 0.80 -0.2
263,634 + GFF249 0.80 -0.1
263,634 + GFF249 0.80 +0.6
263,634 + GFF249 0.80 +0.2
263,635 - GFF249 0.80 -0.3
263,635 - GFF249 0.80 -0.3
263,635 - GFF249 0.80 -1.5
263,742 + GFF249 0.84 -1.3
263,743 - GFF249 0.84 -1.4
264,033 + -0.3
264,033 + -0.1
264,033 + +0.3
264,033 + -0.1
264,033 + +0.2
264,033 + +0.2
264,033 + +0.3
264,034 - -0.3
264,046 - +0.7
264,112 + +0.4
264,112 + -0.1
264,112 + +0.3
264,113 - +0.6
264,268 - +0.4
264,268 - -0.3
264,268 - +0.8
264,344 + +0.7
264,344 + +0.1
264,344 + -0.3
264,344 + -0.3
264,344 + +0.4
264,345 - -0.1
264,345 - -0.1
264,345 - +0.2
264,345 - -2.6
264,345 - +0.6
264,345 - -0.1
264,446 + GFF250 0.21 +0.2
264,446 + GFF250 0.21 -0.6
264,447 - GFF250 0.21 -1.4
264,447 - GFF250 0.21 +0.4
264,447 - GFF250 0.21 -0.3
264,447 - GFF250 0.21 +0.2
264,447 - GFF250 0.21 -0.1
264,447 - GFF250 0.21 -0.1
264,447 - GFF250 0.21 +0.6
264,653 + GFF250 0.62 +0.4
264,701 + GFF250 0.72 +0.8
264,701 + GFF250 0.72 -0.2
264,902 + -0.6
265,054 - +1.0
265,054 - +0.1
265,054 - -0.0
265,054 - +0.5
265,135 + GFF251 0.12 +0.6
265,135 + GFF251 0.12 +0.3
265,135 + GFF251 0.12 -1.4
265,135 + GFF251 0.12 -0.9
265,136 - GFF251 0.12 +0.2
265,136 - GFF251 0.12 -0.0
265,136 - GFF251 0.12 +0.3
265,225 + GFF251 0.22 -0.6
265,225 + GFF251 0.22 -0.7
265,226 - GFF251 0.22 -0.2
265,226 - GFF251 0.22 -0.5
265,226 - GFF251 0.22 -1.3
265,226 - GFF251 0.22 +0.7
265,229 + GFF251 0.23 +0.1
265,500 + GFF251 0.54 -1.1
265,550 + GFF251 0.60 -1.8
265,550 + GFF251 0.60 -0.6
265,550 + GFF251 0.60 -0.1
265,551 - GFF251 0.60 +0.3
265,551 - GFF251 0.60 +0.9
265,551 - GFF251 0.60 -1.6
265,597 + GFF251 0.65 +0.2
265,604 + GFF251 0.66 -0.8
265,605 - GFF251 0.66 +0.0
265,605 - GFF251 0.66 -0.8
265,667 + GFF251 0.73 -1.0

Or see this region's nucleotide sequence