Strain Fitness in Xanthobacter sp. DMC5 around GFF2444

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2443 and GFF2444 are separated by 257 nucleotidesGFF2444 and GFF2445 are separated by 35 nucleotides GFF2443 - Transketolase 2, at 99,499 to 101,562 GFF2443 GFF2444 - Phosphoribulokinase, chromosomal, at 101,820 to 102,695 GFF2444 GFF2445 - Fructose-1,6-bisphosphatase class 1, at 102,731 to 103,825 GFF2445 Position (kb) 101 102 103Strain fitness (log2 ratio) -2 -1 0 1 2 3at 100.877 kb on + strand, within GFF2443at 100.878 kb on - strand, within GFF2443at 101.285 kb on + strand, within GFF2443at 101.286 kb on - strand, within GFF2443at 101.286 kb on - strand, within GFF2443at 101.286 kb on - strand, within GFF2443at 101.645 kb on + strandat 101.809 kb on - strandat 101.809 kb on - strandat 101.892 kb on + strandat 101.963 kb on - strand, within GFF2444at 102.115 kb on + strand, within GFF2444at 102.115 kb on + strand, within GFF2444at 102.116 kb on - strand, within GFF2444at 102.116 kb on - strand, within GFF2444at 102.116 kb on - strand, within GFF2444at 102.124 kb on + strand, within GFF2444at 102.125 kb on - strand, within GFF2444at 102.125 kb on - strand, within GFF2444at 102.307 kb on + strand, within GFF2444at 102.307 kb on + strand, within GFF2444at 102.308 kb on - strand, within GFF2444at 102.308 kb on - strand, within GFF2444at 102.373 kb on + strand, within GFF2444at 102.374 kb on - strand, within GFF2444at 102.404 kb on - strand, within GFF2444at 102.404 kb on - strand, within GFF2444at 102.437 kb on - strand, within GFF2444at 102.548 kb on - strand, within GFF2444at 102.548 kb on - strand, within GFF2444at 102.548 kb on - strand, within GFF2444at 102.570 kb on - strand, within GFF2444at 102.735 kb on - strandat 102.798 kb on + strandat 102.799 kb on - strandat 102.951 kb on + strand, within GFF2445at 102.951 kb on + strand, within GFF2445at 102.952 kb on - strand, within GFF2445at 102.978 kb on + strand, within GFF2445at 102.978 kb on + strand, within GFF2445at 102.979 kb on - strand, within GFF2445at 102.979 kb on - strand, within GFF2445at 103.008 kb on + strand, within GFF2445at 103.008 kb on + strand, within GFF2445at 103.008 kb on + strand, within GFF2445at 103.008 kb on + strand, within GFF2445at 103.008 kb on + strand, within GFF2445at 103.008 kb on + strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.009 kb on - strand, within GFF2445at 103.122 kb on + strand, within GFF2445at 103.122 kb on + strand, within GFF2445at 103.122 kb on + strand, within GFF2445at 103.123 kb on - strand, within GFF2445at 103.152 kb on + strand, within GFF2445at 103.153 kb on - strand, within GFF2445at 103.153 kb on - strand, within GFF2445at 103.305 kb on + strand, within GFF2445at 103.306 kb on - strand, within GFF2445at 103.561 kb on - strand, within GFF2445

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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100,877 + GFF2443 0.67 +3.0
100,878 - GFF2443 0.67 -0.2
101,285 + GFF2443 0.87 +0.1
101,286 - GFF2443 0.87 -0.6
101,286 - GFF2443 0.87 +1.1
101,286 - GFF2443 0.87 -0.3
101,645 + -0.2
101,809 - -0.1
101,809 - -0.1
101,892 + -1.8
101,963 - GFF2444 0.16 -0.4
102,115 + GFF2444 0.34 -0.2
102,115 + GFF2444 0.34 -0.5
102,116 - GFF2444 0.34 -0.5
102,116 - GFF2444 0.34 +0.7
102,116 - GFF2444 0.34 +0.0
102,124 + GFF2444 0.35 -0.9
102,125 - GFF2444 0.35 -0.1
102,125 - GFF2444 0.35 +0.2
102,307 + GFF2444 0.56 -0.2
102,307 + GFF2444 0.56 -0.2
102,308 - GFF2444 0.56 -0.6
102,308 - GFF2444 0.56 -0.2
102,373 + GFF2444 0.63 +0.2
102,374 - GFF2444 0.63 -0.0
102,404 - GFF2444 0.67 -0.6
102,404 - GFF2444 0.67 +0.6
102,437 - GFF2444 0.70 -0.4
102,548 - GFF2444 0.83 +0.1
102,548 - GFF2444 0.83 +0.4
102,548 - GFF2444 0.83 +0.1
102,570 - GFF2444 0.86 -0.4
102,735 - -1.2
102,798 + -0.3
102,799 - -1.1
102,951 + GFF2445 0.20 -0.6
102,951 + GFF2445 0.20 -0.5
102,952 - GFF2445 0.20 +0.9
102,978 + GFF2445 0.23 -0.7
102,978 + GFF2445 0.23 -0.2
102,979 - GFF2445 0.23 -0.1
102,979 - GFF2445 0.23 +0.1
103,008 + GFF2445 0.25 -0.2
103,008 + GFF2445 0.25 -0.6
103,008 + GFF2445 0.25 -0.1
103,008 + GFF2445 0.25 +0.4
103,008 + GFF2445 0.25 +0.6
103,008 + GFF2445 0.25 -0.3
103,009 - GFF2445 0.25 +0.6
103,009 - GFF2445 0.25 -0.8
103,009 - GFF2445 0.25 -2.0
103,009 - GFF2445 0.25 +1.0
103,009 - GFF2445 0.25 -0.3
103,009 - GFF2445 0.25 -0.4
103,009 - GFF2445 0.25 +0.3
103,009 - GFF2445 0.25 -0.4
103,009 - GFF2445 0.25 -0.6
103,009 - GFF2445 0.25 +0.6
103,009 - GFF2445 0.25 -0.2
103,009 - GFF2445 0.25 +0.4
103,122 + GFF2445 0.36 +0.3
103,122 + GFF2445 0.36 -0.2
103,122 + GFF2445 0.36 -0.9
103,123 - GFF2445 0.36 -0.3
103,152 + GFF2445 0.38 -0.9
103,153 - GFF2445 0.39 -0.8
103,153 - GFF2445 0.39 -0.5
103,305 + GFF2445 0.52 -0.3
103,306 - GFF2445 0.53 +0.6
103,561 - GFF2445 0.76 -0.2

Or see this region's nucleotide sequence