Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2437 and GFF2438 are separated by 244 nucleotides GFF2438 and GFF2439 are separated by 188 nucleotides GFF2439 and GFF2440 overlap by 1 nucleotides GFF2440 and GFF2441 are separated by 70 nucleotides
GFF2437 - Aspartate-semialdehyde dehydrogenase 2, at 93,616 to 94,650
GFF2437
GFF2438 - hypothetical protein, at 94,895 to 95,248
GFF2438
GFF2439 - Sulfate transport system permease protein CysT, at 95,437 to 96,303
GFF2439
GFF2440 - Sulfate transport system permease protein CysW, at 96,303 to 97,175
GFF2440
GFF2441 - Ribulose-phosphate 3-epimerase, at 97,246 to 97,938
GFF2441
Position (kb) 95
96
97 Strain fitness (log2 ratio) -2
-1
0
1 at 94.667 kb on - strand at 94.850 kb on - strand at 94.850 kb on - strand at 95.059 kb on + strand, within GFF2438 at 95.060 kb on - strand, within GFF2438 at 95.082 kb on - strand, within GFF2438 at 95.123 kb on + strand, within GFF2438 at 95.123 kb on + strand, within GFF2438 at 95.124 kb on - strand, within GFF2438 at 95.165 kb on + strand, within GFF2438 at 95.165 kb on + strand, within GFF2438 at 95.165 kb on + strand, within GFF2438 at 95.165 kb on + strand, within GFF2438 at 95.166 kb on - strand, within GFF2438 at 95.166 kb on - strand, within GFF2438 at 95.252 kb on - strand at 95.298 kb on - strand at 95.386 kb on - strand at 95.428 kb on + strand at 95.428 kb on + strand at 95.428 kb on + strand at 95.428 kb on + strand at 95.429 kb on - strand at 95.429 kb on - strand at 95.533 kb on + strand, within GFF2439 at 95.555 kb on + strand, within GFF2439 at 95.556 kb on - strand, within GFF2439 at 95.556 kb on - strand, within GFF2439 at 95.556 kb on - strand, within GFF2439 at 95.556 kb on - strand, within GFF2439 at 95.606 kb on - strand, within GFF2439 at 95.606 kb on - strand, within GFF2439 at 95.696 kb on - strand, within GFF2439 at 95.867 kb on + strand, within GFF2439 at 95.867 kb on + strand, within GFF2439 at 95.868 kb on - strand, within GFF2439 at 96.184 kb on + strand, within GFF2439 at 96.184 kb on + strand, within GFF2439 at 96.185 kb on - strand, within GFF2439 at 96.190 kb on + strand, within GFF2439 at 96.190 kb on + strand, within GFF2439 at 96.191 kb on - strand, within GFF2439 at 96.191 kb on - strand, within GFF2439 at 96.459 kb on + strand, within GFF2440 at 96.459 kb on + strand, within GFF2440 at 96.459 kb on + strand, within GFF2440 at 96.633 kb on + strand, within GFF2440 at 96.663 kb on + strand, within GFF2440 at 96.663 kb on + strand, within GFF2440 at 96.664 kb on - strand, within GFF2440 at 96.664 kb on - strand, within GFF2440 at 96.675 kb on + strand, within GFF2440 at 96.916 kb on - strand, within GFF2440 at 97.030 kb on - strand, within GFF2440 at 97.072 kb on + strand, within GFF2440 at 97.073 kb on - strand, within GFF2440 at 97.111 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 94,667 - -0.1 94,850 - +0.2 94,850 - -0.3 95,059 + GFF2438 0.46 +0.1 95,060 - GFF2438 0.47 +0.2 95,082 - GFF2438 0.53 -1.2 95,123 + GFF2438 0.64 +0.5 95,123 + GFF2438 0.64 -0.9 95,124 - GFF2438 0.65 +0.3 95,165 + GFF2438 0.76 -0.8 95,165 + GFF2438 0.76 -1.4 95,165 + GFF2438 0.76 -0.7 95,165 + GFF2438 0.76 -0.2 95,166 - GFF2438 0.77 -1.0 95,166 - GFF2438 0.77 +0.1 95,252 - -0.7 95,298 - -0.4 95,386 - -1.0 95,428 + -1.8 95,428 + -0.3 95,428 + +1.4 95,428 + +1.4 95,429 - +1.1 95,429 - +0.3 95,533 + GFF2439 0.11 +1.0 95,555 + GFF2439 0.14 -0.5 95,556 - GFF2439 0.14 -0.4 95,556 - GFF2439 0.14 +0.8 95,556 - GFF2439 0.14 -0.3 95,556 - GFF2439 0.14 -1.0 95,606 - GFF2439 0.19 +0.2 95,606 - GFF2439 0.19 -0.4 95,696 - GFF2439 0.30 -0.1 95,867 + GFF2439 0.50 -1.0 95,867 + GFF2439 0.50 -0.7 95,868 - GFF2439 0.50 -0.8 96,184 + GFF2439 0.86 -1.2 96,184 + GFF2439 0.86 -0.4 96,185 - GFF2439 0.86 +1.0 96,190 + GFF2439 0.87 -0.3 96,190 + GFF2439 0.87 +0.1 96,191 - GFF2439 0.87 -0.6 96,191 - GFF2439 0.87 -0.3 96,459 + GFF2440 0.18 -0.0 96,459 + GFF2440 0.18 +0.3 96,459 + GFF2440 0.18 +0.5 96,633 + GFF2440 0.38 +0.1 96,663 + GFF2440 0.41 +0.3 96,663 + GFF2440 0.41 -0.2 96,664 - GFF2440 0.41 -0.2 96,664 - GFF2440 0.41 -0.2 96,675 + GFF2440 0.43 +0.3 96,916 - GFF2440 0.70 +0.4 97,030 - GFF2440 0.83 -1.4 97,072 + GFF2440 0.88 +0.8 97,073 - GFF2440 0.88 +1.1 97,111 - +0.1
Or see this region's nucleotide sequence