Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF240 and GFF241 are separated by 14 nucleotides GFF241 and GFF242 are separated by 13 nucleotides GFF242 and GFF243 are separated by 3 nucleotides
GFF240 - hypothetical protein, at 250,481 to 250,669
GFF240
GFF241 - Non-homologous end joining protein Ku, at 250,684 to 251,484
GFF241
GFF242 - Multifunctional non-homologous end joining protein LigD, at 251,498 to 254,089
GFF242
GFF243 - Non-homologous end joining protein Ku, at 254,093 to 254,995
GFF243
Position (kb) 251
252
253
254
255 Strain fitness (log2 ratio) -1
0
1
2 at 250.882 kb on + strand, within GFF241 at 250.904 kb on - strand, within GFF241 at 250.904 kb on - strand, within GFF241 at 250.904 kb on - strand, within GFF241 at 250.904 kb on - strand, within GFF241 at 251.006 kb on - strand, within GFF241 at 251.024 kb on - strand, within GFF241 at 251.024 kb on - strand, within GFF241 at 251.142 kb on + strand, within GFF241 at 251.143 kb on - strand, within GFF241 at 251.143 kb on - strand, within GFF241 at 251.143 kb on - strand, within GFF241 at 251.482 kb on + strand at 251.483 kb on - strand at 251.499 kb on + strand at 251.580 kb on + strand at 251.580 kb on + strand at 251.580 kb on + strand at 251.581 kb on - strand at 251.715 kb on + strand at 251.716 kb on - strand at 251.716 kb on - strand at 251.966 kb on + strand, within GFF242 at 252.106 kb on - strand, within GFF242 at 252.277 kb on - strand, within GFF242 at 252.277 kb on - strand, within GFF242 at 252.279 kb on + strand, within GFF242 at 252.280 kb on - strand, within GFF242 at 252.322 kb on - strand, within GFF242 at 252.651 kb on + strand, within GFF242 at 252.652 kb on - strand, within GFF242 at 253.005 kb on + strand, within GFF242 at 253.005 kb on + strand, within GFF242 at 253.005 kb on + strand, within GFF242 at 253.006 kb on - strand, within GFF242 at 253.006 kb on - strand, within GFF242 at 253.009 kb on - strand, within GFF242 at 253.234 kb on - strand, within GFF242 at 253.310 kb on + strand, within GFF242 at 253.310 kb on + strand, within GFF242 at 253.311 kb on - strand, within GFF242 at 253.311 kb on - strand, within GFF242 at 253.311 kb on - strand, within GFF242 at 253.706 kb on - strand, within GFF242 at 253.719 kb on + strand, within GFF242 at 253.720 kb on - strand, within GFF242 at 253.824 kb on + strand, within GFF242 at 253.941 kb on + strand at 253.942 kb on - strand at 254.070 kb on + strand at 254.344 kb on - strand, within GFF243 at 254.355 kb on + strand, within GFF243 at 254.478 kb on + strand, within GFF243 at 254.478 kb on + strand, within GFF243 at 254.673 kb on + strand, within GFF243 at 254.673 kb on + strand, within GFF243 at 254.716 kb on - strand, within GFF243 at 254.775 kb on + strand, within GFF243 at 254.775 kb on + strand, within GFF243 at 254.775 kb on + strand, within GFF243 at 254.775 kb on + strand, within GFF243 at 254.797 kb on - strand, within GFF243 at 254.850 kb on + strand, within GFF243 at 254.850 kb on + strand, within GFF243 at 254.850 kb on + strand, within GFF243 at 254.850 kb on + strand, within GFF243 at 254.851 kb on - strand, within GFF243 at 254.851 kb on - strand, within GFF243 at 255.019 kb on + strand at 255.019 kb on + strand at 255.020 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 250,882 + GFF241 0.25 +0.2 250,904 - GFF241 0.27 +0.5 250,904 - GFF241 0.27 +0.1 250,904 - GFF241 0.27 +0.2 250,904 - GFF241 0.27 -0.0 251,006 - GFF241 0.40 -0.1 251,024 - GFF241 0.42 -0.3 251,024 - GFF241 0.42 +0.0 251,142 + GFF241 0.57 -0.1 251,143 - GFF241 0.57 -0.3 251,143 - GFF241 0.57 -0.7 251,143 - GFF241 0.57 -1.3 251,482 + -0.0 251,483 - +0.5 251,499 + -0.4 251,580 + -0.1 251,580 + -0.3 251,580 + +0.5 251,581 - -0.8 251,715 + -0.1 251,716 - -0.2 251,716 - +0.4 251,966 + GFF242 0.18 +0.1 252,106 - GFF242 0.23 +0.4 252,277 - GFF242 0.30 +0.9 252,277 - GFF242 0.30 +0.7 252,279 + GFF242 0.30 +1.4 252,280 - GFF242 0.30 -0.1 252,322 - GFF242 0.32 -0.2 252,651 + GFF242 0.44 +0.2 252,652 - GFF242 0.45 +0.4 253,005 + GFF242 0.58 -0.4 253,005 + GFF242 0.58 -0.7 253,005 + GFF242 0.58 -0.8 253,006 - GFF242 0.58 -0.3 253,006 - GFF242 0.58 -0.3 253,009 - GFF242 0.58 +0.8 253,234 - GFF242 0.67 -0.1 253,310 + GFF242 0.70 -0.2 253,310 + GFF242 0.70 -0.8 253,311 - GFF242 0.70 +0.5 253,311 - GFF242 0.70 -0.2 253,311 - GFF242 0.70 +0.3 253,706 - GFF242 0.85 -0.8 253,719 + GFF242 0.86 +0.7 253,720 - GFF242 0.86 +0.3 253,824 + GFF242 0.90 +1.8 253,941 + -0.4 253,942 - +0.2 254,070 + +0.6 254,344 - GFF243 0.28 -0.8 254,355 + GFF243 0.29 -0.7 254,478 + GFF243 0.43 +0.3 254,478 + GFF243 0.43 +0.9 254,673 + GFF243 0.64 +0.1 254,673 + GFF243 0.64 -0.2 254,716 - GFF243 0.69 +0.4 254,775 + GFF243 0.76 +0.5 254,775 + GFF243 0.76 -1.1 254,775 + GFF243 0.76 +0.0 254,775 + GFF243 0.76 +1.0 254,797 - GFF243 0.78 +0.6 254,850 + GFF243 0.84 -0.6 254,850 + GFF243 0.84 -1.1 254,850 + GFF243 0.84 -0.3 254,850 + GFF243 0.84 -0.2 254,851 - GFF243 0.84 -0.1 254,851 - GFF243 0.84 +0.8 255,019 + -0.2 255,019 + -0.2 255,020 - +0.3
Or see this region's nucleotide sequence