Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2405 and GFF2406 are separated by 127 nucleotides GFF2406 and GFF2407 are separated by 258 nucleotides GFF2407 and GFF2408 are separated by 259 nucleotides
GFF2405 - hypothetical protein, at 60,070 to 61,968
GFF2405
GFF2406 - hypothetical protein, at 62,096 to 62,248
GFF2406
GFF2407 - Beta-alanine--pyruvate aminotransferase, at 62,507 to 63,862
GFF2407
GFF2408 - hypothetical protein, at 64,122 to 65,999
GFF2408
Position (kb) 62
63
64 Strain fitness (log2 ratio) -2
-1
0
1
2 at 61.721 kb on - strand, within GFF2405 at 62.042 kb on + strand at 62.159 kb on + strand, within GFF2406 at 62.159 kb on + strand, within GFF2406 at 62.159 kb on + strand, within GFF2406 at 62.159 kb on + strand, within GFF2406 at 62.160 kb on - strand, within GFF2406 at 62.160 kb on - strand, within GFF2406 at 62.160 kb on - strand, within GFF2406 at 62.246 kb on + strand at 62.264 kb on + strand at 62.264 kb on + strand at 62.264 kb on + strand at 62.319 kb on + strand at 62.320 kb on - strand at 62.874 kb on + strand, within GFF2407 at 62.875 kb on - strand, within GFF2407 at 62.875 kb on - strand, within GFF2407 at 62.880 kb on + strand, within GFF2407 at 63.021 kb on + strand, within GFF2407 at 63.022 kb on - strand, within GFF2407 at 63.042 kb on + strand, within GFF2407 at 63.096 kb on + strand, within GFF2407 at 63.096 kb on + strand, within GFF2407 at 63.096 kb on + strand, within GFF2407 at 63.097 kb on - strand, within GFF2407 at 63.252 kb on + strand, within GFF2407 at 63.253 kb on - strand, within GFF2407 at 63.294 kb on + strand, within GFF2407 at 63.294 kb on + strand, within GFF2407 at 63.294 kb on + strand, within GFF2407 at 63.294 kb on + strand, within GFF2407 at 63.396 kb on + strand, within GFF2407 at 63.582 kb on + strand, within GFF2407 at 63.583 kb on - strand, within GFF2407 at 63.583 kb on - strand, within GFF2407 at 63.717 kb on + strand, within GFF2407 at 63.717 kb on + strand, within GFF2407 at 63.717 kb on + strand, within GFF2407 at 63.718 kb on - strand, within GFF2407 at 63.720 kb on + strand, within GFF2407 at 63.721 kb on - strand, within GFF2407 at 63.721 kb on - strand, within GFF2407 at 63.782 kb on - strand at 63.988 kb on + strand at 64.238 kb on + strand at 64.238 kb on + strand at 64.239 kb on - strand at 64.336 kb on - strand, within GFF2408 at 64.497 kb on + strand, within GFF2408 at 64.497 kb on + strand, within GFF2408 at 64.497 kb on + strand, within GFF2408 at 64.498 kb on - strand, within GFF2408 at 64.498 kb on - strand, within GFF2408 at 64.498 kb on - strand, within GFF2408
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 61,721 - GFF2405 0.87 -1.0 62,042 + +0.3 62,159 + GFF2406 0.41 -0.1 62,159 + GFF2406 0.41 -1.0 62,159 + GFF2406 0.41 -0.3 62,159 + GFF2406 0.41 +1.4 62,160 - GFF2406 0.42 +0.2 62,160 - GFF2406 0.42 +0.5 62,160 - GFF2406 0.42 +0.4 62,246 + +0.9 62,264 + +0.1 62,264 + -0.8 62,264 + -0.6 62,319 + +1.5 62,320 - -0.6 62,874 + GFF2407 0.27 -0.0 62,875 - GFF2407 0.27 +0.3 62,875 - GFF2407 0.27 -0.6 62,880 + GFF2407 0.28 -0.5 63,021 + GFF2407 0.38 -0.0 63,022 - GFF2407 0.38 +0.3 63,042 + GFF2407 0.39 -0.2 63,096 + GFF2407 0.43 -0.1 63,096 + GFF2407 0.43 +0.5 63,096 + GFF2407 0.43 +0.1 63,097 - GFF2407 0.44 +2.0 63,252 + GFF2407 0.55 +0.6 63,253 - GFF2407 0.55 +0.3 63,294 + GFF2407 0.58 +0.5 63,294 + GFF2407 0.58 -0.5 63,294 + GFF2407 0.58 +0.2 63,294 + GFF2407 0.58 +0.9 63,396 + GFF2407 0.66 -0.3 63,582 + GFF2407 0.79 -2.0 63,583 - GFF2407 0.79 -0.2 63,583 - GFF2407 0.79 +0.2 63,717 + GFF2407 0.89 +0.1 63,717 + GFF2407 0.89 -0.2 63,717 + GFF2407 0.89 +0.2 63,718 - GFF2407 0.89 +0.4 63,720 + GFF2407 0.89 +0.1 63,721 - GFF2407 0.90 +1.2 63,721 - GFF2407 0.90 -0.1 63,782 - -0.8 63,988 + +0.9 64,238 + +0.8 64,238 + +0.1 64,239 - -0.7 64,336 - GFF2408 0.11 +0.2 64,497 + GFF2408 0.20 +0.4 64,497 + GFF2408 0.20 -0.1 64,497 + GFF2408 0.20 +1.3 64,498 - GFF2408 0.20 +1.6 64,498 - GFF2408 0.20 +0.4 64,498 - GFF2408 0.20 +1.1
Or see this region's nucleotide sequence