Strain Fitness in Xanthobacter sp. DMC5 around GFF2404

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2402 and GFF2403 are separated by 210 nucleotidesGFF2403 and GFF2404 are separated by 10 nucleotidesGFF2404 and GFF2405 are separated by 994 nucleotides GFF2402 - hypothetical protein, at 55,919 to 56,893 GFF2402 GFF2403 - hypothetical protein, at 57,104 to 57,565 GFF2403 GFF2404 - hypothetical protein, at 57,576 to 59,075 GFF2404 GFF2405 - hypothetical protein, at 60,070 to 61,968 GFF2405 Position (kb) 57 58 59 60Strain fitness (log2 ratio) -2 -1 0 1at 56.675 kb on + strand, within GFF2402at 56.675 kb on + strand, within GFF2402at 56.675 kb on + strand, within GFF2402at 56.675 kb on + strand, within GFF2402at 56.675 kb on + strand, within GFF2402at 56.676 kb on - strand, within GFF2402at 56.676 kb on - strand, within GFF2402at 56.676 kb on - strand, within GFF2402at 56.676 kb on - strand, within GFF2402at 56.676 kb on - strand, within GFF2402at 56.676 kb on - strand, within GFF2402at 56.883 kb on - strandat 56.952 kb on + strandat 56.955 kb on - strandat 57.006 kb on - strandat 57.080 kb on + strandat 57.196 kb on + strand, within GFF2403at 57.485 kb on + strand, within GFF2403at 57.633 kb on - strandat 57.633 kb on - strandat 57.639 kb on + strandat 57.640 kb on - strandat 57.640 kb on - strandat 57.777 kb on + strand, within GFF2404at 57.777 kb on + strand, within GFF2404at 57.778 kb on - strand, within GFF2404at 57.778 kb on - strand, within GFF2404at 57.778 kb on - strand, within GFF2404at 57.778 kb on - strand, within GFF2404at 57.778 kb on - strand, within GFF2404at 57.793 kb on - strand, within GFF2404at 58.014 kb on + strand, within GFF2404at 58.014 kb on + strand, within GFF2404at 58.134 kb on + strand, within GFF2404at 58.134 kb on + strand, within GFF2404at 58.134 kb on + strand, within GFF2404at 58.134 kb on + strand, within GFF2404at 58.134 kb on + strand, within GFF2404at 58.134 kb on + strand, within GFF2404at 58.134 kb on + strand, within GFF2404at 58.135 kb on - strand, within GFF2404at 58.135 kb on - strand, within GFF2404at 58.410 kb on + strand, within GFF2404at 58.737 kb on + strand, within GFF2404at 58.785 kb on + strand, within GFF2404at 58.785 kb on + strand, within GFF2404at 58.785 kb on + strand, within GFF2404at 58.785 kb on + strand, within GFF2404at 58.785 kb on + strand, within GFF2404at 58.785 kb on + strand, within GFF2404at 58.785 kb on + strand, within GFF2404at 58.786 kb on - strand, within GFF2404at 58.815 kb on + strand, within GFF2404at 58.815 kb on + strand, within GFF2404at 58.815 kb on + strand, within GFF2404at 58.816 kb on - strand, within GFF2404at 58.816 kb on - strand, within GFF2404at 58.920 kb on + strand, within GFF2404at 58.920 kb on + strand, within GFF2404at 58.920 kb on + strand, within GFF2404at 58.920 kb on + strand, within GFF2404at 58.920 kb on + strand, within GFF2404at 58.921 kb on - strand, within GFF2404at 58.921 kb on - strand, within GFF2404at 58.921 kb on - strand, within GFF2404at 58.921 kb on - strand, within GFF2404at 58.921 kb on - strand, within GFF2404at 59.073 kb on + strandat 59.073 kb on + strandat 59.074 kb on - strandat 59.303 kb on - strandat 59.340 kb on + strandat 59.341 kb on - strandat 59.341 kb on - strandat 59.341 kb on - strandat 59.560 kb on + strandat 59.647 kb on - strandat 59.739 kb on - strandat 59.897 kb on + strandat 59.920 kb on + strandat 59.921 kb on - strandat 59.921 kb on - strandat 59.995 kb on + strandat 59.995 kb on + strandat 59.996 kb on - strandat 60.029 kb on + strandat 60.030 kb on - strandat 60.030 kb on - strandat 60.030 kb on - strandat 60.030 kb on - strandat 60.030 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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56,675 + GFF2402 0.78 +0.5
56,675 + GFF2402 0.78 -0.1
56,675 + GFF2402 0.78 +0.6
56,675 + GFF2402 0.78 +0.8
56,675 + GFF2402 0.78 +0.5
56,676 - GFF2402 0.78 +0.3
56,676 - GFF2402 0.78 +0.2
56,676 - GFF2402 0.78 +0.7
56,676 - GFF2402 0.78 +0.5
56,676 - GFF2402 0.78 +0.2
56,676 - GFF2402 0.78 -0.0
56,883 - +1.3
56,952 + +0.7
56,955 - +0.0
57,006 - -0.1
57,080 + +0.5
57,196 + GFF2403 0.20 -0.3
57,485 + GFF2403 0.82 -0.3
57,633 - +0.5
57,633 - +0.6
57,639 + +0.5
57,640 - -0.3
57,640 - -0.2
57,777 + GFF2404 0.13 +0.7
57,777 + GFF2404 0.13 +0.2
57,778 - GFF2404 0.13 +0.0
57,778 - GFF2404 0.13 +1.6
57,778 - GFF2404 0.13 +0.9
57,778 - GFF2404 0.13 +0.8
57,778 - GFF2404 0.13 +0.0
57,793 - GFF2404 0.14 +1.3
58,014 + GFF2404 0.29 -0.3
58,014 + GFF2404 0.29 -0.5
58,134 + GFF2404 0.37 +0.6
58,134 + GFF2404 0.37 +0.4
58,134 + GFF2404 0.37 +0.4
58,134 + GFF2404 0.37 -0.9
58,134 + GFF2404 0.37 +0.4
58,134 + GFF2404 0.37 +0.3
58,134 + GFF2404 0.37 +1.3
58,135 - GFF2404 0.37 +0.1
58,135 - GFF2404 0.37 +0.2
58,410 + GFF2404 0.56 -0.1
58,737 + GFF2404 0.77 +0.7
58,785 + GFF2404 0.81 +0.3
58,785 + GFF2404 0.81 +0.3
58,785 + GFF2404 0.81 +1.0
58,785 + GFF2404 0.81 -0.2
58,785 + GFF2404 0.81 +0.7
58,785 + GFF2404 0.81 +1.1
58,785 + GFF2404 0.81 -0.6
58,786 - GFF2404 0.81 -0.2
58,815 + GFF2404 0.83 +1.1
58,815 + GFF2404 0.83 -1.8
58,815 + GFF2404 0.83 -0.8
58,816 - GFF2404 0.83 +1.1
58,816 - GFF2404 0.83 -0.5
58,920 + GFF2404 0.90 +0.2
58,920 + GFF2404 0.90 +0.4
58,920 + GFF2404 0.90 -1.9
58,920 + GFF2404 0.90 +0.5
58,920 + GFF2404 0.90 +0.5
58,921 - GFF2404 0.90 +0.4
58,921 - GFF2404 0.90 +0.7
58,921 - GFF2404 0.90 +0.5
58,921 - GFF2404 0.90 +0.3
58,921 - GFF2404 0.90 -1.2
59,073 + -0.6
59,073 + +0.5
59,074 - -1.5
59,303 - +0.4
59,340 + +0.8
59,341 - +0.1
59,341 - +0.0
59,341 - +0.6
59,560 + -0.3
59,647 - +1.1
59,739 - -0.2
59,897 + -1.5
59,920 + +1.6
59,921 - +0.8
59,921 - +1.4
59,995 + +0.4
59,995 + +0.7
59,996 - -0.2
60,029 + +0.5
60,030 - +1.0
60,030 - +0.1
60,030 - +0.7
60,030 - -1.0
60,030 - +0.1

Or see this region's nucleotide sequence