Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2394 and GFF2395 are separated by 142 nucleotides GFF2395 and GFF2396 overlap by 4 nucleotides GFF2396 and GFF2397 are separated by 180 nucleotides
GFF2394 - hypothetical protein, at 46,213 to 46,413
GFF2394
GFF2395 - hypothetical protein, at 46,556 to 47,290
GFF2395
GFF2396 - N-ethylmaleimide reductase, at 47,287 to 48,381
GFF2396
GFF2397 - Trans-2,3-dihydro-3-hydroxyanthranilate isomerase, at 48,562 to 49,467
GFF2397
Position (kb) 47
48
49 Strain fitness (log2 ratio) -1
0
1
2 at 46.463 kb on + strand at 46.463 kb on + strand at 46.464 kb on - strand at 46.480 kb on + strand at 46.480 kb on + strand at 46.502 kb on + strand at 46.584 kb on + strand at 46.584 kb on + strand at 46.585 kb on - strand at 46.585 kb on - strand at 46.585 kb on - strand at 46.906 kb on - strand, within GFF2395 at 46.928 kb on - strand, within GFF2395 at 46.974 kb on - strand, within GFF2395 at 46.974 kb on - strand, within GFF2395 at 47.316 kb on - strand at 47.322 kb on + strand at 47.324 kb on + strand at 47.324 kb on + strand at 47.324 kb on + strand at 47.325 kb on - strand at 47.325 kb on - strand at 47.325 kb on - strand at 47.345 kb on + strand at 47.346 kb on - strand at 47.346 kb on - strand at 47.599 kb on - strand, within GFF2396 at 47.600 kb on + strand, within GFF2396 at 47.600 kb on + strand, within GFF2396 at 47.600 kb on + strand, within GFF2396 at 47.601 kb on - strand, within GFF2396 at 47.789 kb on + strand, within GFF2396 at 47.841 kb on - strand, within GFF2396 at 47.841 kb on - strand, within GFF2396 at 47.841 kb on - strand, within GFF2396 at 47.910 kb on - strand, within GFF2396 at 48.125 kb on - strand, within GFF2396 at 48.158 kb on + strand, within GFF2396 at 48.159 kb on - strand, within GFF2396 at 48.179 kb on + strand, within GFF2396 at 48.180 kb on - strand, within GFF2396 at 48.180 kb on - strand, within GFF2396 at 48.248 kb on + strand, within GFF2396 at 48.251 kb on + strand, within GFF2396 at 48.252 kb on - strand, within GFF2396 at 48.431 kb on + strand at 48.432 kb on - strand at 48.432 kb on - strand at 48.851 kb on + strand, within GFF2397 at 48.852 kb on - strand, within GFF2397 at 48.857 kb on + strand, within GFF2397 at 48.858 kb on - strand, within GFF2397 at 48.858 kb on - strand, within GFF2397
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 46,463 + +1.7 46,463 + -0.8 46,464 - +0.8 46,480 + +0.1 46,480 + +1.2 46,502 + +1.4 46,584 + +0.1 46,584 + +0.0 46,585 - +0.8 46,585 - +0.5 46,585 - -0.4 46,906 - GFF2395 0.48 +0.1 46,928 - GFF2395 0.51 +0.8 46,974 - GFF2395 0.57 +0.1 46,974 - GFF2395 0.57 +1.1 47,316 - +0.3 47,322 + +0.2 47,324 + -0.7 47,324 + -0.8 47,324 + -0.1 47,325 - +0.1 47,325 - -1.0 47,325 - +0.4 47,345 + +1.0 47,346 - -0.5 47,346 - -0.5 47,599 - GFF2396 0.28 +2.1 47,600 + GFF2396 0.29 -0.2 47,600 + GFF2396 0.29 -0.0 47,600 + GFF2396 0.29 +1.2 47,601 - GFF2396 0.29 +0.5 47,789 + GFF2396 0.46 +1.1 47,841 - GFF2396 0.51 -0.3 47,841 - GFF2396 0.51 -0.2 47,841 - GFF2396 0.51 +0.9 47,910 - GFF2396 0.57 +0.8 48,125 - GFF2396 0.77 +0.3 48,158 + GFF2396 0.80 +0.3 48,159 - GFF2396 0.80 +1.5 48,179 + GFF2396 0.81 -0.4 48,180 - GFF2396 0.82 +2.5 48,180 - GFF2396 0.82 -0.1 48,248 + GFF2396 0.88 +0.5 48,251 + GFF2396 0.88 +0.7 48,252 - GFF2396 0.88 +0.0 48,431 + -0.2 48,432 - +0.8 48,432 - -0.4 48,851 + GFF2397 0.32 +0.4 48,852 - GFF2397 0.32 +0.8 48,857 + GFF2397 0.33 -0.4 48,858 - GFF2397 0.33 -0.1 48,858 - GFF2397 0.33 +0.6
Or see this region's nucleotide sequence