Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2359 and GFF2360 are separated by 154 nucleotides GFF2360 and GFF2361 are separated by 202 nucleotides GFF2361 and GFF2362 are separated by 142 nucleotides GFF2362 and GFF2363 are separated by 10 nucleotides
GFF2359 - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, at 12,125 to 13,045
GFF2359
GFF2360 - hypothetical protein, at 13,200 to 13,736
GFF2360
GFF2361 - hypothetical protein, at 13,939 to 15,186
GFF2361
GFF2362 - hypothetical protein, at 15,329 to 15,793
GFF2362
GFF2363 - HTH-type transcriptional regulator HdfR, at 15,804 to 16,718
GFF2363
Position (kb) 13
14
15
16 Strain fitness (log2 ratio) -1
0
1
2
3 at 13.018 kb on - strand at 13.260 kb on + strand, within GFF2360 at 13.261 kb on - strand, within GFF2360 at 13.261 kb on - strand, within GFF2360 at 14.001 kb on + strand at 14.002 kb on - strand at 14.002 kb on - strand at 14.141 kb on + strand, within GFF2361 at 14.142 kb on - strand, within GFF2361 at 14.142 kb on - strand, within GFF2361 at 14.142 kb on - strand, within GFF2361 at 14.142 kb on - strand, within GFF2361 at 14.142 kb on - strand, within GFF2361 at 14.142 kb on - strand, within GFF2361 at 14.201 kb on + strand, within GFF2361 at 14.201 kb on + strand, within GFF2361 at 14.202 kb on - strand, within GFF2361 at 14.202 kb on - strand, within GFF2361 at 14.202 kb on - strand, within GFF2361 at 14.224 kb on + strand, within GFF2361 at 14.224 kb on + strand, within GFF2361 at 14.225 kb on - strand, within GFF2361 at 14.251 kb on + strand, within GFF2361 at 14.251 kb on + strand, within GFF2361 at 14.251 kb on + strand, within GFF2361 at 14.454 kb on + strand, within GFF2361 at 14.455 kb on - strand, within GFF2361 at 14.626 kb on + strand, within GFF2361 at 14.626 kb on + strand, within GFF2361 at 14.627 kb on - strand, within GFF2361 at 14.791 kb on + strand, within GFF2361 at 14.791 kb on + strand, within GFF2361 at 14.836 kb on + strand, within GFF2361 at 14.837 kb on - strand, within GFF2361 at 14.900 kb on - strand, within GFF2361 at 14.986 kb on + strand, within GFF2361 at 14.987 kb on - strand, within GFF2361 at 14.987 kb on - strand, within GFF2361 at 14.987 kb on - strand, within GFF2361 at 15.001 kb on + strand, within GFF2361 at 15.001 kb on + strand, within GFF2361 at 15.002 kb on - strand, within GFF2361 at 15.049 kb on + strand, within GFF2361 at 15.067 kb on + strand at 15.068 kb on - strand at 15.068 kb on - strand at 15.068 kb on - strand at 15.085 kb on + strand at 15.085 kb on + strand at 15.085 kb on + strand at 15.085 kb on + strand at 15.085 kb on + strand at 15.086 kb on - strand at 15.182 kb on + strand at 15.249 kb on + strand at 15.500 kb on + strand, within GFF2362 at 15.973 kb on - strand, within GFF2363 at 16.067 kb on + strand, within GFF2363
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 13,018 - -0.8 13,260 + GFF2360 0.11 -0.6 13,261 - GFF2360 0.11 +0.4 13,261 - GFF2360 0.11 -0.6 14,001 + -1.4 14,002 - -0.4 14,002 - -0.4 14,141 + GFF2361 0.16 +0.2 14,142 - GFF2361 0.16 -0.3 14,142 - GFF2361 0.16 +0.2 14,142 - GFF2361 0.16 -0.4 14,142 - GFF2361 0.16 +0.9 14,142 - GFF2361 0.16 +0.3 14,142 - GFF2361 0.16 -0.9 14,201 + GFF2361 0.21 -0.3 14,201 + GFF2361 0.21 +0.3 14,202 - GFF2361 0.21 +0.2 14,202 - GFF2361 0.21 -0.3 14,202 - GFF2361 0.21 +0.1 14,224 + GFF2361 0.23 +0.8 14,224 + GFF2361 0.23 -0.2 14,225 - GFF2361 0.23 +0.2 14,251 + GFF2361 0.25 +0.4 14,251 + GFF2361 0.25 -1.0 14,251 + GFF2361 0.25 +0.5 14,454 + GFF2361 0.41 -0.4 14,455 - GFF2361 0.41 -1.3 14,626 + GFF2361 0.55 -0.5 14,626 + GFF2361 0.55 +0.1 14,627 - GFF2361 0.55 -0.0 14,791 + GFF2361 0.68 -0.9 14,791 + GFF2361 0.68 +1.4 14,836 + GFF2361 0.72 -1.6 14,837 - GFF2361 0.72 +0.1 14,900 - GFF2361 0.77 -0.5 14,986 + GFF2361 0.84 -0.0 14,987 - GFF2361 0.84 +0.2 14,987 - GFF2361 0.84 -0.2 14,987 - GFF2361 0.84 +1.1 15,001 + GFF2361 0.85 +0.3 15,001 + GFF2361 0.85 -0.0 15,002 - GFF2361 0.85 +0.1 15,049 + GFF2361 0.89 -0.1 15,067 + +0.1 15,068 - +1.0 15,068 - +1.1 15,068 - +0.8 15,085 + +1.4 15,085 + -0.4 15,085 + +0.1 15,085 + +0.4 15,085 + +0.1 15,086 - +0.1 15,182 + +0.8 15,249 + +0.5 15,500 + GFF2362 0.37 +3.0 15,973 - GFF2363 0.18 +0.0 16,067 + GFF2363 0.29 -0.0
Or see this region's nucleotide sequence