Strain Fitness in Xanthobacter sp. DMC5 around GFF2352

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2351 and GFF2352 are separated by 93 nucleotidesGFF2352 and GFF2353 are separated by 173 nucleotides GFF2351 - hypothetical protein, at 2,991 to 5,258 GFF2351 GFF2352 - hypothetical protein, at 5,352 to 5,627 GFF2352 GFF2353 - hypothetical protein, at 5,801 to 7,174 GFF2353 Position (kb) 5 6Strain fitness (log2 ratio) -1 0 1 2at 4.434 kb on + strand, within GFF2351at 4.435 kb on - strand, within GFF2351at 4.435 kb on - strand, within GFF2351at 4.477 kb on - strand, within GFF2351at 4.485 kb on + strand, within GFF2351at 4.485 kb on + strand, within GFF2351at 4.486 kb on - strand, within GFF2351at 4.486 kb on - strand, within GFF2351at 4.486 kb on - strand, within GFF2351at 4.549 kb on - strand, within GFF2351at 4.549 kb on - strand, within GFF2351at 4.549 kb on - strand, within GFF2351at 4.549 kb on - strand, within GFF2351at 4.549 kb on - strand, within GFF2351at 4.654 kb on - strand, within GFF2351at 4.656 kb on + strand, within GFF2351at 4.656 kb on + strand, within GFF2351at 4.657 kb on - strand, within GFF2351at 4.657 kb on - strand, within GFF2351at 4.657 kb on - strand, within GFF2351at 4.658 kb on - strand, within GFF2351at 4.662 kb on + strand, within GFF2351at 4.662 kb on + strand, within GFF2351at 4.663 kb on - strand, within GFF2351at 4.674 kb on + strand, within GFF2351at 4.674 kb on + strand, within GFF2351at 4.675 kb on - strand, within GFF2351at 4.676 kb on + strand, within GFF2351at 4.734 kb on + strand, within GFF2351at 4.734 kb on + strand, within GFF2351at 4.788 kb on + strand, within GFF2351at 4.789 kb on - strand, within GFF2351at 4.789 kb on - strand, within GFF2351at 4.789 kb on - strand, within GFF2351at 4.905 kb on + strand, within GFF2351at 4.906 kb on - strand, within GFF2351at 4.906 kb on - strand, within GFF2351at 5.056 kb on - strandat 5.067 kb on + strandat 5.068 kb on - strandat 5.068 kb on - strandat 5.124 kb on + strandat 5.124 kb on + strandat 5.160 kb on + strandat 5.161 kb on - strandat 5.247 kb on + strandat 5.247 kb on + strandat 5.248 kb on - strandat 5.248 kb on - strandat 5.248 kb on - strandat 5.400 kb on + strand, within GFF2352at 5.400 kb on + strand, within GFF2352at 5.400 kb on + strand, within GFF2352at 5.401 kb on - strand, within GFF2352at 5.401 kb on - strand, within GFF2352at 5.465 kb on - strand, within GFF2352at 5.465 kb on - strand, within GFF2352at 5.482 kb on + strand, within GFF2352at 5.494 kb on + strand, within GFF2352at 5.494 kb on + strand, within GFF2352at 5.560 kb on + strand, within GFF2352at 5.561 kb on - strand, within GFF2352at 5.561 kb on - strand, within GFF2352at 5.715 kb on - strandat 5.776 kb on + strandat 5.776 kb on + strandat 5.776 kb on + strandat 5.777 kb on - strandat 5.777 kb on - strandat 5.777 kb on - strandat 5.870 kb on - strandat 6.019 kb on - strand, within GFF2353at 6.019 kb on - strand, within GFF2353at 6.171 kb on + strand, within GFF2353at 6.171 kb on + strand, within GFF2353at 6.192 kb on + strand, within GFF2353at 6.193 kb on - strand, within GFF2353at 6.246 kb on + strand, within GFF2353at 6.247 kb on - strand, within GFF2353at 6.285 kb on + strand, within GFF2353at 6.285 kb on + strand, within GFF2353at 6.285 kb on + strand, within GFF2353at 6.285 kb on + strand, within GFF2353at 6.285 kb on + strand, within GFF2353at 6.285 kb on + strand, within GFF2353at 6.286 kb on - strand, within GFF2353at 6.299 kb on + strand, within GFF2353at 6.300 kb on - strand, within GFF2353at 6.300 kb on - strand, within GFF2353at 6.300 kb on - strand, within GFF2353at 6.372 kb on - strand, within GFF2353at 6.624 kb on + strand, within GFF2353at 6.624 kb on + strand, within GFF2353at 6.624 kb on + strand, within GFF2353at 6.625 kb on - strand, within GFF2353

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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4,434 + GFF2351 0.64 -0.2
4,435 - GFF2351 0.64 -0.6
4,435 - GFF2351 0.64 -0.4
4,477 - GFF2351 0.66 +1.8
4,485 + GFF2351 0.66 -0.1
4,485 + GFF2351 0.66 -0.4
4,486 - GFF2351 0.66 -0.5
4,486 - GFF2351 0.66 -1.1
4,486 - GFF2351 0.66 -0.3
4,549 - GFF2351 0.69 -0.9
4,549 - GFF2351 0.69 +0.1
4,549 - GFF2351 0.69 -0.8
4,549 - GFF2351 0.69 +0.2
4,549 - GFF2351 0.69 +1.2
4,654 - GFF2351 0.73 -0.8
4,656 + GFF2351 0.73 -0.7
4,656 + GFF2351 0.73 +1.1
4,657 - GFF2351 0.73 +1.0
4,657 - GFF2351 0.73 +0.6
4,657 - GFF2351 0.73 -0.1
4,658 - GFF2351 0.74 -0.1
4,662 + GFF2351 0.74 +0.5
4,662 + GFF2351 0.74 +0.5
4,663 - GFF2351 0.74 -1.3
4,674 + GFF2351 0.74 -1.4
4,674 + GFF2351 0.74 -0.4
4,675 - GFF2351 0.74 +0.3
4,676 + GFF2351 0.74 -0.0
4,734 + GFF2351 0.77 +0.8
4,734 + GFF2351 0.77 +0.6
4,788 + GFF2351 0.79 -0.5
4,789 - GFF2351 0.79 -0.5
4,789 - GFF2351 0.79 +0.4
4,789 - GFF2351 0.79 -1.2
4,905 + GFF2351 0.84 +0.4
4,906 - GFF2351 0.84 -0.6
4,906 - GFF2351 0.84 +0.6
5,056 - +0.5
5,067 + +0.2
5,068 - -0.4
5,068 - -0.4
5,124 + +0.6
5,124 + +0.3
5,160 + +0.7
5,161 - -0.2
5,247 + -0.1
5,247 + -0.3
5,248 - +0.5
5,248 - +0.7
5,248 - +0.1
5,400 + GFF2352 0.17 -0.6
5,400 + GFF2352 0.17 +0.2
5,400 + GFF2352 0.17 +0.3
5,401 - GFF2352 0.18 -1.2
5,401 - GFF2352 0.18 -0.3
5,465 - GFF2352 0.41 -0.0
5,465 - GFF2352 0.41 -0.3
5,482 + GFF2352 0.47 -0.8
5,494 + GFF2352 0.51 +0.4
5,494 + GFF2352 0.51 +0.1
5,560 + GFF2352 0.75 -0.6
5,561 - GFF2352 0.76 +0.6
5,561 - GFF2352 0.76 -0.1
5,715 - +0.4
5,776 + -0.7
5,776 + +0.8
5,776 + -0.1
5,777 - +0.1
5,777 - +0.0
5,777 - -0.4
5,870 - +0.3
6,019 - GFF2353 0.16 +0.2
6,019 - GFF2353 0.16 -1.0
6,171 + GFF2353 0.27 +0.6
6,171 + GFF2353 0.27 -0.0
6,192 + GFF2353 0.28 +0.4
6,193 - GFF2353 0.29 -0.5
6,246 + GFF2353 0.32 -0.4
6,247 - GFF2353 0.32 -1.1
6,285 + GFF2353 0.35 +0.3
6,285 + GFF2353 0.35 -0.2
6,285 + GFF2353 0.35 -0.8
6,285 + GFF2353 0.35 +0.2
6,285 + GFF2353 0.35 +1.2
6,285 + GFF2353 0.35 +0.5
6,286 - GFF2353 0.35 +0.5
6,299 + GFF2353 0.36 -0.1
6,300 - GFF2353 0.36 +0.3
6,300 - GFF2353 0.36 -0.1
6,300 - GFF2353 0.36 +0.0
6,372 - GFF2353 0.42 -1.5
6,624 + GFF2353 0.60 -1.7
6,624 + GFF2353 0.60 -0.2
6,624 + GFF2353 0.60 -0.7
6,625 - GFF2353 0.60 -0.6

Or see this region's nucleotide sequence