Strain Fitness in Xanthobacter sp. DMC5 around GFF2349

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2349 and GFF2350 are separated by 175 nucleotidesGFF2350 and GFF2351 are separated by 215 nucleotides GFF2349 - Bifunctional protein PaaZ, at 147 to 2,180 GFF2349 GFF2350 - hypothetical protein, at 2,356 to 2,775 GFF2350 GFF2351 - hypothetical protein, at 2,991 to 5,258 GFF2351 Position (kb) 0 1 2 3Strain fitness (log2 ratio) -2 -1 0 1at 0.144 kb on + strandat 0.144 kb on + strandat 0.145 kb on - strandat 0.145 kb on - strandat 0.145 kb on - strandat 0.168 kb on + strandat 0.169 kb on - strandat 0.348 kb on - strandat 0.471 kb on + strand, within GFF2349at 0.472 kb on - strand, within GFF2349at 0.478 kb on - strand, within GFF2349at 0.561 kb on + strand, within GFF2349at 0.711 kb on + strand, within GFF2349at 1.035 kb on - strand, within GFF2349at 1.035 kb on - strand, within GFF2349at 1.199 kb on - strand, within GFF2349at 1.448 kb on + strand, within GFF2349at 1.448 kb on + strand, within GFF2349at 1.448 kb on + strand, within GFF2349at 1.449 kb on - strand, within GFF2349at 1.449 kb on - strand, within GFF2349at 1.452 kb on + strand, within GFF2349at 1.452 kb on + strand, within GFF2349at 1.452 kb on + strand, within GFF2349at 1.641 kb on + strand, within GFF2349at 1.852 kb on - strand, within GFF2349at 1.854 kb on + strand, within GFF2349at 1.855 kb on - strand, within GFF2349at 1.920 kb on + strand, within GFF2349at 1.920 kb on + strand, within GFF2349at 1.921 kb on - strand, within GFF2349at 1.921 kb on - strand, within GFF2349at 1.986 kb on + strandat 1.987 kb on - strandat 2.088 kb on + strandat 2.088 kb on + strandat 2.088 kb on + strandat 2.089 kb on - strandat 2.311 kb on + strandat 2.333 kb on + strandat 2.334 kb on - strandat 2.334 kb on - strandat 2.452 kb on + strand, within GFF2350at 2.452 kb on + strand, within GFF2350at 2.452 kb on + strand, within GFF2350at 2.452 kb on + strand, within GFF2350at 2.453 kb on - strand, within GFF2350at 2.453 kb on - strand, within GFF2350at 2.453 kb on - strand, within GFF2350at 2.453 kb on - strand, within GFF2350at 2.921 kb on + strandat 2.921 kb on + strandat 2.926 kb on + strandat 3.117 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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144 + +0.4
144 + +0.1
145 - -0.2
145 - +1.4
145 - -0.6
168 + -2.3
169 - -0.2
348 - -0.5
471 + GFF2349 0.16 +0.5
472 - GFF2349 0.16 +1.4
478 - GFF2349 0.16 -0.7
561 + GFF2349 0.20 -0.6
711 + GFF2349 0.28 -0.4
1,035 - GFF2349 0.44 -0.5
1,035 - GFF2349 0.44 -0.0
1,199 - GFF2349 0.52 -1.2
1,448 + GFF2349 0.64 -1.2
1,448 + GFF2349 0.64 -0.1
1,448 + GFF2349 0.64 +0.0
1,449 - GFF2349 0.64 -0.9
1,449 - GFF2349 0.64 -0.8
1,452 + GFF2349 0.64 +0.6
1,452 + GFF2349 0.64 -0.6
1,452 + GFF2349 0.64 -0.4
1,641 + GFF2349 0.73 +0.7
1,852 - GFF2349 0.84 +1.4
1,854 + GFF2349 0.84 +0.0
1,855 - GFF2349 0.84 -0.2
1,920 + GFF2349 0.87 -0.3
1,920 + GFF2349 0.87 -1.6
1,921 - GFF2349 0.87 -0.4
1,921 - GFF2349 0.87 +0.1
1,986 + +0.0
1,987 - +0.4
2,088 + -0.4
2,088 + +0.0
2,088 + -1.3
2,089 - +0.8
2,311 + -0.2
2,333 + -0.2
2,334 - -0.6
2,334 - +0.0
2,452 + GFF2350 0.23 -0.3
2,452 + GFF2350 0.23 -1.4
2,452 + GFF2350 0.23 +0.3
2,452 + GFF2350 0.23 -0.4
2,453 - GFF2350 0.23 +1.0
2,453 - GFF2350 0.23 -0.5
2,453 - GFF2350 0.23 -1.2
2,453 - GFF2350 0.23 -0.3
2,921 + -0.2
2,921 + -0.2
2,926 + +0.1
3,117 - +0.5

Or see this region's nucleotide sequence