Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2235 and GFF2236 are separated by 78 nucleotides GFF2236 and GFF2237 are separated by 218 nucleotides GFF2237 and GFF2238 are separated by 111 nucleotides
GFF2235 - Putative glyoxylase CFP32, at 939,198 to 939,581
GFF2235
GFF2236 - hypothetical protein, at 939,660 to 940,172
GFF2236
GFF2237 - Alpha-ketoglutarate-dependent dioxygenase AlkB, at 940,391 to 941,032
GFF2237
GFF2238 - hypothetical protein, at 941,144 to 942,094
GFF2238
Position (kb) 940
941
942 Strain fitness (log2 ratio) -1
0
1 at 939.451 kb on + strand, within GFF2235 at 939.451 kb on + strand, within GFF2235 at 939.451 kb on + strand, within GFF2235 at 939.451 kb on + strand, within GFF2235 at 939.451 kb on + strand, within GFF2235 at 939.452 kb on - strand, within GFF2235 at 939.452 kb on - strand, within GFF2235 at 939.454 kb on + strand, within GFF2235 at 939.454 kb on + strand, within GFF2235 at 939.661 kb on + strand at 939.733 kb on + strand, within GFF2236 at 939.734 kb on - strand, within GFF2236 at 939.734 kb on - strand, within GFF2236 at 939.739 kb on + strand, within GFF2236 at 939.766 kb on + strand, within GFF2236 at 939.791 kb on - strand, within GFF2236 at 939.821 kb on - strand, within GFF2236 at 939.821 kb on - strand, within GFF2236 at 939.856 kb on + strand, within GFF2236 at 939.943 kb on + strand, within GFF2236 at 939.944 kb on - strand, within GFF2236 at 939.944 kb on - strand, within GFF2236 at 939.944 kb on - strand, within GFF2236 at 939.944 kb on - strand, within GFF2236 at 939.973 kb on + strand, within GFF2236 at 939.974 kb on - strand, within GFF2236 at 939.974 kb on - strand, within GFF2236 at 939.974 kb on - strand, within GFF2236 at 939.974 kb on - strand, within GFF2236 at 939.974 kb on - strand, within GFF2236 at 940.016 kb on - strand, within GFF2236 at 940.268 kb on + strand at 940.269 kb on - strand at 940.619 kb on + strand, within GFF2237 at 940.743 kb on - strand, within GFF2237 at 940.746 kb on - strand, within GFF2237 at 940.746 kb on - strand, within GFF2237 at 941.366 kb on + strand, within GFF2238 at 941.367 kb on - strand, within GFF2238 at 941.367 kb on - strand, within GFF2238 at 942.002 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 939,451 + GFF2235 0.66 -0.4 939,451 + GFF2235 0.66 +1.0 939,451 + GFF2235 0.66 +0.4 939,451 + GFF2235 0.66 +0.6 939,451 + GFF2235 0.66 +0.9 939,452 - GFF2235 0.66 +1.0 939,452 - GFF2235 0.66 +0.1 939,454 + GFF2235 0.67 +0.1 939,454 + GFF2235 0.67 +0.6 939,661 + -0.5 939,733 + GFF2236 0.14 -0.1 939,734 - GFF2236 0.14 -0.2 939,734 - GFF2236 0.14 +0.1 939,739 + GFF2236 0.15 +0.8 939,766 + GFF2236 0.21 -0.5 939,791 - GFF2236 0.26 -1.3 939,821 - GFF2236 0.31 +0.1 939,821 - GFF2236 0.31 +0.3 939,856 + GFF2236 0.38 +0.4 939,943 + GFF2236 0.55 +0.3 939,944 - GFF2236 0.55 +0.5 939,944 - GFF2236 0.55 +0.0 939,944 - GFF2236 0.55 +0.3 939,944 - GFF2236 0.55 -0.4 939,973 + GFF2236 0.61 +0.7 939,974 - GFF2236 0.61 +0.6 939,974 - GFF2236 0.61 -0.4 939,974 - GFF2236 0.61 +0.5 939,974 - GFF2236 0.61 +0.4 939,974 - GFF2236 0.61 +0.9 940,016 - GFF2236 0.69 +0.2 940,268 + +0.5 940,269 - -1.2 940,619 + GFF2237 0.36 -1.6 940,743 - GFF2237 0.55 -0.4 940,746 - GFF2237 0.55 +0.2 940,746 - GFF2237 0.55 -0.7 941,366 + GFF2238 0.23 -0.1 941,367 - GFF2238 0.23 +1.1 941,367 - GFF2238 0.23 +0.9 942,002 + +0.4
Or see this region's nucleotide sequence