Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2192 and GFF2193 are separated by 84 nucleotides GFF2193 and GFF2194 are separated by 611 nucleotides
GFF2192 - hypothetical protein, at 887,776 to 890,532
GFF2192
GFF2193 - Prophage integrase IntA, at 890,617 to 891,846
GFF2193
GFF2194 - Prophage integrase IntA, at 892,458 to 893,714
GFF2194
Position (kb) 890
891
892 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 889.625 kb on + strand, within GFF2192 at 889.626 kb on - strand, within GFF2192 at 889.645 kb on - strand, within GFF2192 at 889.676 kb on + strand, within GFF2192 at 889.706 kb on + strand, within GFF2192 at 889.706 kb on + strand, within GFF2192 at 889.706 kb on + strand, within GFF2192 at 889.707 kb on - strand, within GFF2192 at 889.707 kb on - strand, within GFF2192 at 889.707 kb on - strand, within GFF2192 at 889.711 kb on + strand, within GFF2192 at 889.711 kb on + strand, within GFF2192 at 889.711 kb on + strand, within GFF2192 at 889.712 kb on - strand, within GFF2192 at 889.712 kb on - strand, within GFF2192 at 889.712 kb on - strand, within GFF2192 at 889.712 kb on - strand, within GFF2192 at 889.752 kb on + strand, within GFF2192 at 889.752 kb on + strand, within GFF2192 at 889.752 kb on + strand, within GFF2192 at 889.753 kb on - strand, within GFF2192 at 889.753 kb on - strand, within GFF2192 at 889.879 kb on - strand, within GFF2192 at 889.910 kb on + strand, within GFF2192 at 889.923 kb on + strand, within GFF2192 at 889.981 kb on - strand, within GFF2192 at 890.003 kb on + strand, within GFF2192 at 890.003 kb on + strand, within GFF2192 at 890.003 kb on + strand, within GFF2192 at 890.219 kb on + strand, within GFF2192 at 890.219 kb on + strand, within GFF2192 at 890.220 kb on - strand, within GFF2192 at 890.220 kb on - strand, within GFF2192 at 890.255 kb on + strand, within GFF2192 at 890.261 kb on + strand at 890.261 kb on + strand at 890.262 kb on - strand at 890.262 kb on - strand at 890.308 kb on + strand at 890.308 kb on + strand at 890.308 kb on + strand at 890.309 kb on - strand at 890.309 kb on - strand at 890.354 kb on + strand at 890.354 kb on + strand at 890.355 kb on - strand at 890.355 kb on - strand at 890.355 kb on - strand at 890.355 kb on - strand at 890.355 kb on - strand at 890.355 kb on - strand at 890.426 kb on + strand at 890.427 kb on - strand at 890.462 kb on + strand at 890.471 kb on + strand at 890.471 kb on + strand at 890.471 kb on + strand at 890.471 kb on + strand at 890.471 kb on + strand at 890.472 kb on - strand at 890.478 kb on + strand at 890.478 kb on + strand at 890.478 kb on + strand at 890.478 kb on + strand at 890.478 kb on + strand at 890.478 kb on + strand at 890.478 kb on + strand at 890.479 kb on - strand at 890.479 kb on - strand at 890.479 kb on - strand at 890.479 kb on - strand at 890.479 kb on - strand at 890.479 kb on - strand at 890.496 kb on + strand at 890.496 kb on + strand at 890.618 kb on + strand at 890.684 kb on + strand at 890.707 kb on + strand at 890.707 kb on + strand at 890.708 kb on - strand at 891.013 kb on + strand, within GFF2193 at 891.013 kb on + strand, within GFF2193 at 891.146 kb on + strand, within GFF2193 at 891.146 kb on + strand, within GFF2193 at 891.147 kb on - strand, within GFF2193 at 891.147 kb on - strand, within GFF2193 at 891.147 kb on - strand, within GFF2193 at 891.147 kb on - strand, within GFF2193 at 891.198 kb on + strand, within GFF2193 at 891.198 kb on + strand, within GFF2193 at 891.199 kb on - strand, within GFF2193 at 891.269 kb on - strand, within GFF2193 at 891.398 kb on + strand, within GFF2193 at 891.504 kb on + strand, within GFF2193 at 891.574 kb on - strand, within GFF2193 at 891.610 kb on - strand, within GFF2193 at 891.762 kb on - strand at 891.846 kb on + strand at 891.890 kb on + strand at 892.044 kb on + strand at 892.092 kb on + strand at 892.092 kb on + strand at 892.092 kb on + strand at 892.093 kb on - strand at 892.094 kb on + strand at 892.094 kb on + strand at 892.094 kb on + strand at 892.094 kb on + strand at 892.095 kb on - strand at 892.095 kb on - strand at 892.095 kb on - strand at 892.199 kb on + strand at 892.199 kb on + strand at 892.200 kb on - strand at 892.276 kb on - strand at 892.292 kb on + strand at 892.293 kb on - strand at 892.294 kb on + strand at 892.294 kb on + strand at 892.442 kb on + strand at 892.442 kb on + strand at 892.542 kb on + strand at 892.542 kb on + strand at 892.790 kb on + strand, within GFF2194 at 892.791 kb on - strand, within GFF2194 at 892.791 kb on - strand, within GFF2194 at 892.791 kb on - strand, within GFF2194 at 892.791 kb on - strand, within GFF2194
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 889,625 + GFF2192 0.67 -0.0 889,626 - GFF2192 0.67 +0.3 889,645 - GFF2192 0.68 -0.6 889,676 + GFF2192 0.69 -1.0 889,706 + GFF2192 0.70 +0.3 889,706 + GFF2192 0.70 +0.4 889,706 + GFF2192 0.70 -0.5 889,707 - GFF2192 0.70 +0.1 889,707 - GFF2192 0.70 -0.6 889,707 - GFF2192 0.70 -0.1 889,711 + GFF2192 0.70 -0.8 889,711 + GFF2192 0.70 -0.3 889,711 + GFF2192 0.70 +0.5 889,712 - GFF2192 0.70 -0.1 889,712 - GFF2192 0.70 -0.0 889,712 - GFF2192 0.70 -0.9 889,712 - GFF2192 0.70 +0.4 889,752 + GFF2192 0.72 -0.2 889,752 + GFF2192 0.72 -0.4 889,752 + GFF2192 0.72 -0.3 889,753 - GFF2192 0.72 -0.0 889,753 - GFF2192 0.72 -0.0 889,879 - GFF2192 0.76 -0.3 889,910 + GFF2192 0.77 +0.0 889,923 + GFF2192 0.78 -0.2 889,981 - GFF2192 0.80 -0.2 890,003 + GFF2192 0.81 -0.3 890,003 + GFF2192 0.81 +0.6 890,003 + GFF2192 0.81 +0.7 890,219 + GFF2192 0.89 -1.8 890,219 + GFF2192 0.89 +0.2 890,220 - GFF2192 0.89 -0.2 890,220 - GFF2192 0.89 -0.5 890,255 + GFF2192 0.90 -0.9 890,261 + -0.3 890,261 + +0.3 890,262 - -0.6 890,262 - -0.4 890,308 + -0.1 890,308 + -1.1 890,308 + -0.4 890,309 - +0.4 890,309 - +0.1 890,354 + +1.3 890,354 + -0.2 890,355 - +0.3 890,355 - +0.1 890,355 - +0.6 890,355 - -1.2 890,355 - -0.0 890,355 - +0.3 890,426 + -0.3 890,427 - -0.5 890,462 + -0.7 890,471 + +0.7 890,471 + -0.8 890,471 + -0.6 890,471 + -1.4 890,471 + -0.6 890,472 - +0.1 890,478 + -1.4 890,478 + -0.5 890,478 + -0.2 890,478 + -1.3 890,478 + -0.6 890,478 + -0.6 890,478 + -0.4 890,479 - +0.3 890,479 - -0.3 890,479 - -0.2 890,479 - +1.5 890,479 - -0.6 890,479 - +2.0 890,496 + -0.4 890,496 + +0.2 890,618 + +0.8 890,684 + -0.6 890,707 + +0.5 890,707 + -3.1 890,708 - -0.1 891,013 + GFF2193 0.32 +0.9 891,013 + GFF2193 0.32 +0.9 891,146 + GFF2193 0.43 +1.0 891,146 + GFF2193 0.43 -1.0 891,147 - GFF2193 0.43 -0.3 891,147 - GFF2193 0.43 +0.2 891,147 - GFF2193 0.43 -0.6 891,147 - GFF2193 0.43 +0.5 891,198 + GFF2193 0.47 -0.7 891,198 + GFF2193 0.47 -0.8 891,199 - GFF2193 0.47 -0.8 891,269 - GFF2193 0.53 -0.2 891,398 + GFF2193 0.63 +0.9 891,504 + GFF2193 0.72 +0.1 891,574 - GFF2193 0.78 -0.7 891,610 - GFF2193 0.81 -1.1 891,762 - -0.4 891,846 + +0.3 891,890 + -0.2 892,044 + -1.4 892,092 + +0.9 892,092 + -0.6 892,092 + +0.1 892,093 - +0.5 892,094 + +0.2 892,094 + -0.8 892,094 + -0.5 892,094 + -0.2 892,095 - -0.5 892,095 - +0.3 892,095 - +0.7 892,199 + +0.2 892,199 + +0.3 892,200 - +0.1 892,276 - +0.6 892,292 + +0.7 892,293 - -1.1 892,294 + +0.9 892,294 + +0.1 892,442 + +0.3 892,442 + -1.4 892,542 + +1.7 892,542 + -0.6 892,790 + GFF2194 0.26 -0.3 892,791 - GFF2194 0.26 -0.7 892,791 - GFF2194 0.26 +0.1 892,791 - GFF2194 0.26 -1.7 892,791 - GFF2194 0.26 -1.9
Or see this region's nucleotide sequence