Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2181 and GFF2182 are separated by 533 nucleotides GFF2182 and GFF2183 are separated by 100 nucleotides GFF2183 and GFF2184 overlap by 1 nucleotides GFF2184 and GFF2185 overlap by 29 nucleotides GFF2185 and GFF2186 overlap by 1 nucleotides GFF2186 and GFF2187 are separated by 53 nucleotides
GFF2181 - HTH-type transcriptional regulator DmlR, at 880,365 to 881,282
GFF2181
GFF2182 - hypothetical protein, at 881,816 to 882,013
GFF2182
GFF2183 - hypothetical protein, at 882,114 to 882,266
GFF2183
GFF2184 - hypothetical protein, at 882,266 to 883,420
GFF2184
GFF2185 - hypothetical protein, at 883,392 to 883,733
GFF2185
GFF2186 - hypothetical protein, at 883,733 to 883,942
GFF2186
GFF2187 - hypothetical protein, at 883,996 to 884,715
GFF2187
Position (kb) 882
883
884 Strain fitness (log2 ratio) -2
-1
0
1 at 881.281 kb on - strand at 881.330 kb on + strand at 881.334 kb on - strand at 881.337 kb on + strand at 881.428 kb on + strand at 881.429 kb on - strand at 881.549 kb on + strand at 881.659 kb on + strand at 881.659 kb on + strand at 881.660 kb on - strand at 881.660 kb on - strand at 881.725 kb on - strand at 881.779 kb on + strand at 881.780 kb on - strand at 881.888 kb on + strand, within GFF2182 at 882.014 kb on + strand at 882.014 kb on + strand at 882.117 kb on + strand at 882.118 kb on - strand at 882.389 kb on + strand, within GFF2184 at 882.390 kb on - strand, within GFF2184 at 882.579 kb on - strand, within GFF2184 at 882.586 kb on + strand, within GFF2184 at 882.723 kb on + strand, within GFF2184 at 882.723 kb on + strand, within GFF2184 at 882.723 kb on + strand, within GFF2184 at 882.723 kb on + strand, within GFF2184 at 882.724 kb on - strand, within GFF2184 at 882.724 kb on - strand, within GFF2184 at 882.724 kb on - strand, within GFF2184 at 882.893 kb on + strand, within GFF2184 at 882.922 kb on + strand, within GFF2184 at 883.115 kb on + strand, within GFF2184 at 883.115 kb on + strand, within GFF2184 at 883.116 kb on - strand, within GFF2184 at 883.508 kb on + strand, within GFF2185 at 883.509 kb on - strand, within GFF2185 at 883.575 kb on + strand, within GFF2185 at 883.576 kb on - strand, within GFF2185 at 883.576 kb on - strand, within GFF2185 at 883.647 kb on + strand, within GFF2185 at 883.648 kb on - strand, within GFF2185 at 883.648 kb on - strand, within GFF2185 at 883.682 kb on - strand, within GFF2185 at 884.171 kb on - strand, within GFF2187 at 884.171 kb on - strand, within GFF2187
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 881,281 - -0.8 881,330 + -1.5 881,334 - +0.3 881,337 + +0.9 881,428 + -0.9 881,429 - -0.8 881,549 + +0.2 881,659 + -1.2 881,659 + +0.3 881,660 - +0.3 881,660 - +0.1 881,725 - -0.5 881,779 + +0.0 881,780 - +0.1 881,888 + GFF2182 0.36 -1.1 882,014 + +0.7 882,014 + -1.1 882,117 + -0.2 882,118 - -0.9 882,389 + GFF2184 0.11 +0.7 882,390 - GFF2184 0.11 -0.4 882,579 - GFF2184 0.27 -0.5 882,586 + GFF2184 0.28 +0.7 882,723 + GFF2184 0.40 -0.3 882,723 + GFF2184 0.40 -1.6 882,723 + GFF2184 0.40 -0.1 882,723 + GFF2184 0.40 -1.0 882,724 - GFF2184 0.40 +0.5 882,724 - GFF2184 0.40 +0.1 882,724 - GFF2184 0.40 -0.1 882,893 + GFF2184 0.54 +0.8 882,922 + GFF2184 0.57 +0.3 883,115 + GFF2184 0.74 -0.1 883,115 + GFF2184 0.74 -0.2 883,116 - GFF2184 0.74 -0.1 883,508 + GFF2185 0.34 +0.4 883,509 - GFF2185 0.34 -0.1 883,575 + GFF2185 0.54 +0.1 883,576 - GFF2185 0.54 +0.5 883,576 - GFF2185 0.54 -0.4 883,647 + GFF2185 0.75 +0.5 883,648 - GFF2185 0.75 +0.4 883,648 - GFF2185 0.75 +0.3 883,682 - GFF2185 0.85 -2.3 884,171 - GFF2187 0.24 +0.1 884,171 - GFF2187 0.24 -0.2
Or see this region's nucleotide sequence