Strain Fitness in Xanthobacter sp. DMC5 around GFF2176

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2174 and GFF2175 are separated by 144 nucleotidesGFF2175 and GFF2176 are separated by 107 nucleotidesGFF2176 and GFF2177 overlap by 4 nucleotidesGFF2177 and GFF2178 are separated by 134 nucleotides GFF2174 - Colistin resistance protein EmrA, at 873,265 to 874,515 GFF2174 GFF2175 - hypothetical protein, at 874,660 to 875,343 GFF2175 GFF2176 - L-lactate dehydrogenase, at 875,451 to 876,626 GFF2176 GFF2177 - Putative L-lactate dehydrogenase operon regulatory protein, at 876,623 to 877,381 GFF2177 GFF2178 - hypothetical protein, at 877,516 to 878,439 GFF2178 Position (kb) 875 876 877Strain fitness (log2 ratio) -3 -2 -1 0 1at 874.576 kb on + strandat 874.578 kb on + strandat 874.731 kb on + strand, within GFF2175at 874.731 kb on + strand, within GFF2175at 874.855 kb on + strand, within GFF2175at 874.855 kb on + strand, within GFF2175at 874.855 kb on + strand, within GFF2175at 874.855 kb on + strand, within GFF2175at 874.855 kb on + strand, within GFF2175at 874.855 kb on + strand, within GFF2175at 874.855 kb on + strand, within GFF2175at 874.855 kb on + strand, within GFF2175at 874.856 kb on - strand, within GFF2175at 874.856 kb on - strand, within GFF2175at 874.856 kb on - strand, within GFF2175at 874.856 kb on - strand, within GFF2175at 874.856 kb on - strand, within GFF2175at 874.856 kb on - strand, within GFF2175at 874.856 kb on - strand, within GFF2175at 875.433 kb on + strandat 875.626 kb on + strand, within GFF2176at 875.627 kb on - strand, within GFF2176at 875.968 kb on + strand, within GFF2176at 875.968 kb on + strand, within GFF2176at 875.968 kb on + strand, within GFF2176at 875.968 kb on + strand, within GFF2176at 875.968 kb on + strand, within GFF2176at 875.969 kb on - strand, within GFF2176at 875.969 kb on - strand, within GFF2176at 875.969 kb on - strand, within GFF2176at 875.969 kb on - strand, within GFF2176at 876.049 kb on + strand, within GFF2176at 876.049 kb on + strand, within GFF2176at 876.241 kb on + strand, within GFF2176at 876.242 kb on - strand, within GFF2176at 876.242 kb on - strand, within GFF2176at 876.242 kb on - strand, within GFF2176at 876.242 kb on - strand, within GFF2176at 876.539 kb on - strandat 876.539 kb on - strandat 876.539 kb on - strandat 876.556 kb on + strandat 876.556 kb on + strandat 876.556 kb on + strandat 876.556 kb on + strandat 876.557 kb on - strandat 876.557 kb on - strandat 876.557 kb on - strandat 876.602 kb on - strandat 876.843 kb on + strand, within GFF2177at 876.843 kb on + strand, within GFF2177at 876.843 kb on + strand, within GFF2177at 876.843 kb on + strand, within GFF2177at 876.843 kb on + strand, within GFF2177at 876.844 kb on - strand, within GFF2177at 876.844 kb on - strand, within GFF2177at 876.844 kb on - strand, within GFF2177at 876.922 kb on + strand, within GFF2177at 876.923 kb on - strand, within GFF2177at 877.119 kb on + strand, within GFF2177at 877.120 kb on - strand, within GFF2177at 877.197 kb on + strand, within GFF2177at 877.197 kb on + strand, within GFF2177at 877.197 kb on + strand, within GFF2177at 877.197 kb on + strand, within GFF2177at 877.197 kb on + strand, within GFF2177at 877.197 kb on + strand, within GFF2177at 877.197 kb on + strand, within GFF2177at 877.197 kb on + strand, within GFF2177at 877.198 kb on - strand, within GFF2177at 877.198 kb on - strand, within GFF2177at 877.198 kb on - strand, within GFF2177at 877.198 kb on - strand, within GFF2177at 877.408 kb on + strandat 877.432 kb on - strandat 877.543 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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874,576 + +0.9
874,578 + -0.7
874,731 + GFF2175 0.10 +0.9
874,731 + GFF2175 0.10 -1.1
874,855 + GFF2175 0.29 +1.1
874,855 + GFF2175 0.29 -0.0
874,855 + GFF2175 0.29 -0.7
874,855 + GFF2175 0.29 +1.2
874,855 + GFF2175 0.29 -1.5
874,855 + GFF2175 0.29 -0.1
874,855 + GFF2175 0.29 -0.2
874,855 + GFF2175 0.29 +0.1
874,856 - GFF2175 0.29 +0.5
874,856 - GFF2175 0.29 -0.6
874,856 - GFF2175 0.29 -0.0
874,856 - GFF2175 0.29 -1.4
874,856 - GFF2175 0.29 -1.3
874,856 - GFF2175 0.29 +0.3
874,856 - GFF2175 0.29 -0.3
875,433 + +0.1
875,626 + GFF2176 0.15 -0.1
875,627 - GFF2176 0.15 -0.9
875,968 + GFF2176 0.44 -0.5
875,968 + GFF2176 0.44 -0.3
875,968 + GFF2176 0.44 -0.7
875,968 + GFF2176 0.44 -0.1
875,968 + GFF2176 0.44 -1.4
875,969 - GFF2176 0.44 -1.5
875,969 - GFF2176 0.44 -1.1
875,969 - GFF2176 0.44 +0.2
875,969 - GFF2176 0.44 -1.0
876,049 + GFF2176 0.51 -0.7
876,049 + GFF2176 0.51 -0.4
876,241 + GFF2176 0.67 -0.2
876,242 - GFF2176 0.67 +0.9
876,242 - GFF2176 0.67 -0.5
876,242 - GFF2176 0.67 -0.6
876,242 - GFF2176 0.67 -0.1
876,539 - -1.3
876,539 - -1.5
876,539 - -1.8
876,556 + -0.6
876,556 + -1.5
876,556 + +0.1
876,556 + -1.2
876,557 - -0.6
876,557 - -0.2
876,557 - -0.9
876,602 - -0.6
876,843 + GFF2177 0.29 -0.9
876,843 + GFF2177 0.29 -0.7
876,843 + GFF2177 0.29 -1.0
876,843 + GFF2177 0.29 -1.3
876,843 + GFF2177 0.29 -0.6
876,844 - GFF2177 0.29 -3.2
876,844 - GFF2177 0.29 -0.3
876,844 - GFF2177 0.29 -1.9
876,922 + GFF2177 0.39 -0.4
876,923 - GFF2177 0.40 -1.5
877,119 + GFF2177 0.65 -2.7
877,120 - GFF2177 0.65 -0.5
877,197 + GFF2177 0.76 -0.0
877,197 + GFF2177 0.76 -0.2
877,197 + GFF2177 0.76 -1.8
877,197 + GFF2177 0.76 -0.9
877,197 + GFF2177 0.76 -0.9
877,197 + GFF2177 0.76 +0.1
877,197 + GFF2177 0.76 -1.6
877,197 + GFF2177 0.76 -0.1
877,198 - GFF2177 0.76 +0.6
877,198 - GFF2177 0.76 +0.5
877,198 - GFF2177 0.76 -0.1
877,198 - GFF2177 0.76 +0.6
877,408 + -1.1
877,432 - +0.9
877,543 - +1.2

Or see this region's nucleotide sequence