Strain Fitness in Xanthobacter sp. DMC5 around GFF2168

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2167 and GFF2168 are separated by 77 nucleotidesGFF2168 and GFF2169 are separated by 30 nucleotidesGFF2169 and GFF2170 are separated by 95 nucleotides GFF2167 - Catecholate siderophore receptor Fiu, at 863,875 to 866,220 GFF2167 GFF2168 - PKHD-type hydroxylase, at 866,298 to 866,981 GFF2168 GFF2169 - hypothetical protein, at 867,012 to 867,455 GFF2169 GFF2170 - Aldehyde oxidoreductase molybdenum-binding subunit PaoC, at 867,551 to 869,764 GFF2170 Position (kb) 866 867Strain fitness (log2 ratio) -2 -1 0 1 2at 865.372 kb on + strand, within GFF2167at 865.372 kb on + strand, within GFF2167at 865.372 kb on + strand, within GFF2167at 865.385 kb on - strand, within GFF2167at 865.385 kb on - strand, within GFF2167at 865.450 kb on + strand, within GFF2167at 865.450 kb on + strand, within GFF2167at 865.451 kb on - strand, within GFF2167at 865.451 kb on - strand, within GFF2167at 865.451 kb on - strand, within GFF2167at 865.451 kb on - strand, within GFF2167at 865.452 kb on + strand, within GFF2167at 865.453 kb on - strand, within GFF2167at 865.522 kb on + strand, within GFF2167at 865.522 kb on + strand, within GFF2167at 865.522 kb on + strand, within GFF2167at 865.522 kb on + strand, within GFF2167at 865.523 kb on - strand, within GFF2167at 865.523 kb on - strand, within GFF2167at 865.525 kb on + strand, within GFF2167at 865.525 kb on + strand, within GFF2167at 865.525 kb on + strand, within GFF2167at 865.526 kb on - strand, within GFF2167at 865.526 kb on - strand, within GFF2167at 865.526 kb on - strand, within GFF2167at 865.526 kb on - strand, within GFF2167at 865.720 kb on + strand, within GFF2167at 865.720 kb on + strand, within GFF2167at 865.721 kb on - strand, within GFF2167at 865.721 kb on - strand, within GFF2167at 865.721 kb on - strand, within GFF2167at 865.840 kb on + strand, within GFF2167at 865.844 kb on - strand, within GFF2167at 865.879 kb on + strand, within GFF2167at 865.879 kb on + strand, within GFF2167at 865.879 kb on + strand, within GFF2167at 865.880 kb on - strand, within GFF2167at 865.880 kb on - strand, within GFF2167at 865.936 kb on + strand, within GFF2167at 865.936 kb on + strand, within GFF2167at 865.936 kb on + strand, within GFF2167at 865.937 kb on - strand, within GFF2167at 865.937 kb on - strand, within GFF2167at 865.937 kb on - strand, within GFF2167at 865.937 kb on - strand, within GFF2167at 865.937 kb on - strand, within GFF2167at 865.937 kb on - strand, within GFF2167at 866.005 kb on + strandat 866.005 kb on + strandat 866.005 kb on + strandat 866.005 kb on + strandat 866.006 kb on - strandat 866.006 kb on - strandat 866.018 kb on - strandat 866.018 kb on - strandat 866.083 kb on + strandat 866.098 kb on + strandat 866.219 kb on - strandat 866.219 kb on - strandat 866.219 kb on - strandat 866.219 kb on - strandat 866.240 kb on + strandat 866.241 kb on - strandat 866.423 kb on + strand, within GFF2168at 866.476 kb on + strand, within GFF2168at 866.476 kb on + strand, within GFF2168at 866.476 kb on + strand, within GFF2168at 866.477 kb on - strand, within GFF2168at 866.477 kb on - strand, within GFF2168at 866.557 kb on - strand, within GFF2168at 866.563 kb on + strand, within GFF2168at 866.563 kb on + strand, within GFF2168at 866.563 kb on + strand, within GFF2168at 866.564 kb on - strand, within GFF2168at 866.676 kb on + strand, within GFF2168at 866.754 kb on + strand, within GFF2168at 866.755 kb on - strand, within GFF2168at 866.865 kb on + strand, within GFF2168at 866.865 kb on + strand, within GFF2168at 866.866 kb on - strand, within GFF2168at 866.866 kb on - strand, within GFF2168at 866.946 kb on + strandat 866.946 kb on + strandat 866.946 kb on + strandat 866.947 kb on - strandat 866.947 kb on - strandat 867.013 kb on + strandat 867.013 kb on + strandat 867.014 kb on - strandat 867.014 kb on - strandat 867.076 kb on + strand, within GFF2169at 867.076 kb on + strand, within GFF2169at 867.077 kb on - strand, within GFF2169at 867.077 kb on - strand, within GFF2169at 867.107 kb on + strand, within GFF2169at 867.211 kb on + strand, within GFF2169at 867.211 kb on + strand, within GFF2169at 867.211 kb on + strand, within GFF2169at 867.212 kb on - strand, within GFF2169at 867.400 kb on + strand, within GFF2169at 867.401 kb on - strand, within GFF2169at 867.577 kb on + strandat 867.577 kb on + strandat 867.578 kb on - strandat 867.579 kb on + strandat 867.579 kb on + strandat 867.579 kb on + strandat 867.579 kb on + strandat 867.579 kb on + strandat 867.579 kb on + strandat 867.579 kb on + strandat 867.580 kb on - strandat 867.580 kb on - strandat 867.580 kb on - strandat 867.580 kb on - strandat 867.580 kb on - strandat 867.600 kb on + strandat 867.630 kb on + strandat 867.630 kb on + strandat 867.630 kb on + strandat 867.630 kb on + strandat 867.631 kb on - strandat 867.980 kb on + strand, within GFF2170

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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865,372 + GFF2167 0.64 -0.2
865,372 + GFF2167 0.64 +1.4
865,372 + GFF2167 0.64 -0.0
865,385 - GFF2167 0.64 -1.3
865,385 - GFF2167 0.64 -0.5
865,450 + GFF2167 0.67 +0.1
865,450 + GFF2167 0.67 -1.6
865,451 - GFF2167 0.67 -0.5
865,451 - GFF2167 0.67 +0.4
865,451 - GFF2167 0.67 +0.7
865,451 - GFF2167 0.67 -1.0
865,452 + GFF2167 0.67 -0.3
865,453 - GFF2167 0.67 -0.7
865,522 + GFF2167 0.70 +0.5
865,522 + GFF2167 0.70 +0.1
865,522 + GFF2167 0.70 +0.6
865,522 + GFF2167 0.70 -0.1
865,523 - GFF2167 0.70 -0.7
865,523 - GFF2167 0.70 -0.6
865,525 + GFF2167 0.70 -0.1
865,525 + GFF2167 0.70 +0.1
865,525 + GFF2167 0.70 +0.3
865,526 - GFF2167 0.70 +1.4
865,526 - GFF2167 0.70 -1.3
865,526 - GFF2167 0.70 -0.9
865,526 - GFF2167 0.70 +0.5
865,720 + GFF2167 0.79 +0.5
865,720 + GFF2167 0.79 +1.4
865,721 - GFF2167 0.79 -0.1
865,721 - GFF2167 0.79 -2.3
865,721 - GFF2167 0.79 +0.4
865,840 + GFF2167 0.84 -1.1
865,844 - GFF2167 0.84 +1.5
865,879 + GFF2167 0.85 -0.0
865,879 + GFF2167 0.85 -0.6
865,879 + GFF2167 0.85 -0.0
865,880 - GFF2167 0.85 -0.3
865,880 - GFF2167 0.85 +0.1
865,936 + GFF2167 0.88 +0.9
865,936 + GFF2167 0.88 +1.4
865,936 + GFF2167 0.88 +0.4
865,937 - GFF2167 0.88 -0.5
865,937 - GFF2167 0.88 -2.5
865,937 - GFF2167 0.88 -1.1
865,937 - GFF2167 0.88 -0.2
865,937 - GFF2167 0.88 +0.1
865,937 - GFF2167 0.88 +0.6
866,005 + -0.2
866,005 + +1.1
866,005 + -0.5
866,005 + -0.7
866,006 - -0.8
866,006 - +0.1
866,018 - +1.0
866,018 - +0.5
866,083 + -0.6
866,098 + -0.9
866,219 - +0.3
866,219 - +0.0
866,219 - +0.5
866,219 - +0.7
866,240 + +0.2
866,241 - -0.0
866,423 + GFF2168 0.18 +0.8
866,476 + GFF2168 0.26 +0.4
866,476 + GFF2168 0.26 +0.1
866,476 + GFF2168 0.26 +0.3
866,477 - GFF2168 0.26 -1.2
866,477 - GFF2168 0.26 +0.9
866,557 - GFF2168 0.38 +0.1
866,563 + GFF2168 0.39 -0.3
866,563 + GFF2168 0.39 +1.0
866,563 + GFF2168 0.39 -0.1
866,564 - GFF2168 0.39 +0.3
866,676 + GFF2168 0.55 -0.8
866,754 + GFF2168 0.67 +2.1
866,755 - GFF2168 0.67 -1.9
866,865 + GFF2168 0.83 -1.0
866,865 + GFF2168 0.83 -2.0
866,866 - GFF2168 0.83 -0.8
866,866 - GFF2168 0.83 +0.3
866,946 + -0.4
866,946 + +1.9
866,946 + +0.1
866,947 - -0.7
866,947 - +0.1
867,013 + -1.3
867,013 + +1.4
867,014 - +0.0
867,014 - +0.3
867,076 + GFF2169 0.14 -0.9
867,076 + GFF2169 0.14 +0.3
867,077 - GFF2169 0.15 -0.2
867,077 - GFF2169 0.15 -1.1
867,107 + GFF2169 0.21 +0.1
867,211 + GFF2169 0.45 +0.6
867,211 + GFF2169 0.45 -0.7
867,211 + GFF2169 0.45 +0.3
867,212 - GFF2169 0.45 +0.0
867,400 + GFF2169 0.87 -1.8
867,401 - GFF2169 0.88 -0.1
867,577 + -0.2
867,577 + -1.3
867,578 - +0.6
867,579 + -0.6
867,579 + +1.1
867,579 + -1.6
867,579 + -0.2
867,579 + +0.1
867,579 + +0.3
867,579 + -0.3
867,580 - +0.4
867,580 - +0.2
867,580 - -0.8
867,580 - +0.9
867,580 - -0.1
867,600 + -1.4
867,630 + -0.3
867,630 + +0.1
867,630 + -0.5
867,630 + -0.7
867,631 - -1.1
867,980 + GFF2170 0.19 -0.2

Or see this region's nucleotide sequence