Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2122 and GFF2123 overlap by 4 nucleotides GFF2123 and GFF2124 are separated by 2 nucleotides
GFF2122 - hypothetical protein, at 806,721 to 807,053
GFF2122
GFF2123 - hypothetical protein, at 807,050 to 810,982
GFF2123
GFF2124 - hypothetical protein, at 810,985 to 812,466
GFF2124
Position (kb) 807
808
809
810
811 Strain fitness (log2 ratio) -2
-1
0
1 at 806.053 kb on + strand at 806.053 kb on + strand at 806.068 kb on + strand at 806.068 kb on + strand at 806.068 kb on + strand at 806.069 kb on - strand at 806.069 kb on - strand at 806.069 kb on - strand at 806.090 kb on + strand at 806.091 kb on - strand at 806.091 kb on - strand at 806.196 kb on + strand at 806.197 kb on - strand at 806.197 kb on - strand at 806.242 kb on - strand at 806.319 kb on - strand at 806.319 kb on - strand at 806.342 kb on - strand at 806.356 kb on + strand at 806.357 kb on - strand at 806.357 kb on - strand at 806.358 kb on + strand at 806.359 kb on - strand at 806.410 kb on - strand at 806.410 kb on - strand at 806.451 kb on + strand at 806.451 kb on + strand at 806.452 kb on - strand at 806.452 kb on - strand at 806.452 kb on - strand at 806.452 kb on - strand at 806.452 kb on - strand at 806.507 kb on - strand at 806.507 kb on - strand at 806.675 kb on + strand at 806.675 kb on + strand at 806.676 kb on - strand at 806.676 kb on - strand at 806.676 kb on - strand at 806.750 kb on + strand at 806.751 kb on - strand at 806.932 kb on + strand, within GFF2122 at 806.932 kb on + strand, within GFF2122 at 806.933 kb on - strand, within GFF2122 at 807.095 kb on + strand at 807.142 kb on + strand at 807.143 kb on - strand at 807.143 kb on - strand at 807.592 kb on + strand, within GFF2123 at 807.592 kb on + strand, within GFF2123 at 807.593 kb on - strand, within GFF2123 at 807.594 kb on + strand, within GFF2123 at 807.595 kb on - strand, within GFF2123 at 807.595 kb on - strand, within GFF2123 at 807.595 kb on - strand, within GFF2123 at 808.002 kb on + strand, within GFF2123 at 808.222 kb on - strand, within GFF2123 at 808.372 kb on - strand, within GFF2123 at 808.532 kb on + strand, within GFF2123 at 808.533 kb on - strand, within GFF2123 at 808.552 kb on + strand, within GFF2123 at 808.671 kb on + strand, within GFF2123 at 809.194 kb on - strand, within GFF2123 at 809.478 kb on + strand, within GFF2123 at 809.478 kb on + strand, within GFF2123 at 809.478 kb on + strand, within GFF2123 at 809.478 kb on + strand, within GFF2123 at 809.478 kb on + strand, within GFF2123 at 809.478 kb on + strand, within GFF2123 at 809.479 kb on - strand, within GFF2123 at 809.479 kb on - strand, within GFF2123 at 809.479 kb on - strand, within GFF2123 at 809.479 kb on - strand, within GFF2123 at 809.479 kb on - strand, within GFF2123 at 809.794 kb on - strand, within GFF2123 at 809.898 kb on + strand, within GFF2123 at 809.898 kb on + strand, within GFF2123 at 809.898 kb on + strand, within GFF2123 at 809.898 kb on + strand, within GFF2123 at 809.898 kb on + strand, within GFF2123 at 809.899 kb on - strand, within GFF2123 at 809.899 kb on - strand, within GFF2123 at 809.899 kb on - strand, within GFF2123 at 810.527 kb on - strand, within GFF2123 at 810.527 kb on - strand, within GFF2123 at 810.527 kb on - strand, within GFF2123 at 810.528 kb on + strand, within GFF2123 at 810.528 kb on + strand, within GFF2123 at 810.529 kb on - strand, within GFF2123 at 810.529 kb on - strand, within GFF2123 at 810.668 kb on + strand at 810.668 kb on + strand at 810.668 kb on + strand at 810.668 kb on + strand at 810.669 kb on - strand at 810.673 kb on + strand at 810.673 kb on + strand at 810.843 kb on + strand at 810.843 kb on + strand at 811.278 kb on - strand, within GFF2124 at 811.652 kb on + strand, within GFF2124 at 811.653 kb on - strand, within GFF2124 at 811.721 kb on + strand, within GFF2124 at 811.721 kb on + strand, within GFF2124 at 811.722 kb on - strand, within GFF2124 at 811.808 kb on + strand, within GFF2124 at 811.808 kb on + strand, within GFF2124
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 806,053 + +0.2 806,053 + -0.9 806,068 + -0.1 806,068 + +0.6 806,068 + -0.7 806,069 - -0.1 806,069 - -0.2 806,069 - +0.1 806,090 + -0.1 806,091 - +1.6 806,091 - -0.3 806,196 + +1.0 806,197 - +0.4 806,197 - -0.4 806,242 - -0.4 806,319 - +1.1 806,319 - +0.0 806,342 - +0.9 806,356 + +0.8 806,357 - -1.3 806,357 - -0.0 806,358 + +0.1 806,359 - +0.1 806,410 - -1.0 806,410 - +0.9 806,451 + -0.9 806,451 + -0.2 806,452 - +0.3 806,452 - -0.2 806,452 - +0.8 806,452 - +0.0 806,452 - -0.3 806,507 - -0.3 806,507 - -1.1 806,675 + +0.5 806,675 + -1.6 806,676 - +0.1 806,676 - +0.2 806,676 - +0.3 806,750 + +0.0 806,751 - -1.3 806,932 + GFF2122 0.63 -0.9 806,932 + GFF2122 0.63 +0.6 806,933 - GFF2122 0.64 +0.7 807,095 + +0.4 807,142 + +0.5 807,143 - -0.9 807,143 - -1.4 807,592 + GFF2123 0.14 -0.6 807,592 + GFF2123 0.14 -0.7 807,593 - GFF2123 0.14 -0.4 807,594 + GFF2123 0.14 +0.5 807,595 - GFF2123 0.14 +1.4 807,595 - GFF2123 0.14 -0.2 807,595 - GFF2123 0.14 +0.3 808,002 + GFF2123 0.24 -0.2 808,222 - GFF2123 0.30 +0.2 808,372 - GFF2123 0.34 +1.3 808,532 + GFF2123 0.38 -0.3 808,533 - GFF2123 0.38 -0.3 808,552 + GFF2123 0.38 -0.5 808,671 + GFF2123 0.41 -0.6 809,194 - GFF2123 0.55 +0.1 809,478 + GFF2123 0.62 -0.2 809,478 + GFF2123 0.62 -0.1 809,478 + GFF2123 0.62 -1.0 809,478 + GFF2123 0.62 +0.7 809,478 + GFF2123 0.62 +1.6 809,478 + GFF2123 0.62 -1.2 809,479 - GFF2123 0.62 -0.8 809,479 - GFF2123 0.62 +0.4 809,479 - GFF2123 0.62 +0.2 809,479 - GFF2123 0.62 -0.3 809,479 - GFF2123 0.62 -0.2 809,794 - GFF2123 0.70 +0.8 809,898 + GFF2123 0.72 -0.4 809,898 + GFF2123 0.72 -0.6 809,898 + GFF2123 0.72 -0.4 809,898 + GFF2123 0.72 -0.4 809,898 + GFF2123 0.72 -0.1 809,899 - GFF2123 0.72 +0.7 809,899 - GFF2123 0.72 +0.5 809,899 - GFF2123 0.72 +1.0 810,527 - GFF2123 0.88 +0.1 810,527 - GFF2123 0.88 -0.1 810,527 - GFF2123 0.88 +1.0 810,528 + GFF2123 0.88 -0.6 810,528 + GFF2123 0.88 +0.3 810,529 - GFF2123 0.88 +0.7 810,529 - GFF2123 0.88 -0.3 810,668 + +0.2 810,668 + +1.1 810,668 + +0.7 810,668 + +0.1 810,669 - -1.3 810,673 + -0.8 810,673 + +0.3 810,843 + -0.2 810,843 + -1.8 811,278 - GFF2124 0.20 -0.2 811,652 + GFF2124 0.45 -0.9 811,653 - GFF2124 0.45 -0.6 811,721 + GFF2124 0.50 -0.5 811,721 + GFF2124 0.50 -1.3 811,722 - GFF2124 0.50 -0.3 811,808 + GFF2124 0.56 -0.4 811,808 + GFF2124 0.56 -0.2
Or see this region's nucleotide sequence