Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2106 and GFF2107 are separated by 137 nucleotides GFF2107 and GFF2108 overlap by 8 nucleotides GFF2108 and GFF2109 are separated by 57 nucleotides GFF2109 and GFF2110 are separated by 141 nucleotides
GFF2106 - Transcriptional regulatory protein OmpR, at 793,963 to 794,676
GFF2106
GFF2107 - hypothetical protein, at 794,814 to 795,536
GFF2107
GFF2108 - hypothetical protein, at 795,529 to 795,963
GFF2108
GFF2109 - hypothetical protein, at 796,021 to 796,608
GFF2109
GFF2110 - hypothetical protein, at 796,750 to 796,950
GFF2110
Position (kb) 795
796 Strain fitness (log2 ratio) -2
-1
0
1 at 794.704 kb on - strand at 794.706 kb on - strand at 794.747 kb on + strand at 794.748 kb on - strand at 795.170 kb on - strand, within GFF2107 at 795.170 kb on - strand, within GFF2107 at 795.229 kb on + strand, within GFF2107 at 795.230 kb on - strand, within GFF2107 at 795.296 kb on - strand, within GFF2107 at 795.347 kb on - strand, within GFF2107 at 795.558 kb on + strand at 795.558 kb on + strand at 795.558 kb on + strand at 795.558 kb on + strand at 795.574 kb on + strand, within GFF2108 at 795.574 kb on + strand, within GFF2108 at 795.575 kb on - strand, within GFF2108 at 795.575 kb on - strand, within GFF2108 at 795.603 kb on - strand, within GFF2108 at 795.653 kb on + strand, within GFF2108 at 795.653 kb on + strand, within GFF2108 at 795.968 kb on - strand at 796.239 kb on - strand, within GFF2109 at 796.239 kb on - strand, within GFF2109 at 796.365 kb on - strand, within GFF2109 at 796.450 kb on - strand, within GFF2109 at 796.453 kb on - strand, within GFF2109 at 796.453 kb on - strand, within GFF2109 at 796.453 kb on - strand, within GFF2109 at 796.453 kb on - strand, within GFF2109 at 796.454 kb on + strand, within GFF2109 at 796.455 kb on - strand, within GFF2109 at 796.455 kb on - strand, within GFF2109 at 796.704 kb on + strand at 796.704 kb on + strand at 796.704 kb on + strand at 796.948 kb on + strand at 796.949 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 794,704 - +0.0 794,706 - +0.5 794,747 + +0.2 794,748 - -1.2 795,170 - GFF2107 0.49 +0.5 795,170 - GFF2107 0.49 -0.1 795,229 + GFF2107 0.57 -0.6 795,230 - GFF2107 0.58 +0.7 795,296 - GFF2107 0.67 -1.0 795,347 - GFF2107 0.74 -0.2 795,558 + -0.1 795,558 + +0.1 795,558 + -0.3 795,558 + +0.7 795,574 + GFF2108 0.10 +0.1 795,574 + GFF2108 0.10 +0.1 795,575 - GFF2108 0.11 +1.0 795,575 - GFF2108 0.11 -0.2 795,603 - GFF2108 0.17 +0.3 795,653 + GFF2108 0.29 -0.1 795,653 + GFF2108 0.29 +0.6 795,968 - -0.7 796,239 - GFF2109 0.37 -1.3 796,239 - GFF2109 0.37 -0.0 796,365 - GFF2109 0.59 -2.4 796,450 - GFF2109 0.73 +0.4 796,453 - GFF2109 0.73 +0.7 796,453 - GFF2109 0.73 -0.4 796,453 - GFF2109 0.73 +1.5 796,453 - GFF2109 0.73 -0.1 796,454 + GFF2109 0.74 -0.1 796,455 - GFF2109 0.74 -0.6 796,455 - GFF2109 0.74 +0.8 796,704 + +0.3 796,704 + +1.2 796,704 + -0.4 796,948 + -0.2 796,949 - +0.3
Or see this region's nucleotide sequence