Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2025 and GFF2026 overlap by 11 nucleotides GFF2026 and GFF2027 are separated by 80 nucleotides GFF2027 and GFF2028 overlap by 14 nucleotides
GFF2025 - Sensor histidine kinase RegB, at 698,052 to 699,359
GFF2025
GFF2026 - Photosynthetic apparatus regulatory protein RegA, at 699,349 to 699,882
GFF2026
GFF2027 - Putrescine--pyruvate aminotransferase, at 699,963 to 701,381
GFF2027
GFF2028 - D-malate dehydrogenase [decarboxylating], at 701,368 to 702,441
GFF2028
Position (kb) 699
700
701
702 Strain fitness (log2 ratio) -1
0
1
2 at 699.342 kb on + strand at 699.343 kb on - strand at 699.343 kb on - strand at 699.434 kb on - strand, within GFF2026 at 699.440 kb on + strand, within GFF2026 at 699.440 kb on + strand, within GFF2026 at 699.441 kb on - strand, within GFF2026 at 699.652 kb on + strand, within GFF2026 at 699.670 kb on - strand, within GFF2026 at 699.880 kb on + strand at 699.880 kb on + strand at 699.880 kb on + strand at 699.880 kb on + strand at 699.880 kb on + strand at 699.880 kb on + strand at 699.881 kb on - strand at 699.881 kb on - strand at 699.881 kb on - strand at 699.881 kb on - strand at 700.331 kb on + strand, within GFF2027 at 700.332 kb on - strand, within GFF2027 at 700.333 kb on + strand, within GFF2027 at 700.384 kb on + strand, within GFF2027 at 700.442 kb on - strand, within GFF2027 at 700.481 kb on - strand, within GFF2027 at 700.481 kb on - strand, within GFF2027 at 700.481 kb on - strand, within GFF2027 at 700.481 kb on - strand, within GFF2027 at 700.481 kb on - strand, within GFF2027 at 700.801 kb on + strand, within GFF2027 at 700.802 kb on - strand, within GFF2027 at 700.802 kb on - strand, within GFF2027 at 700.904 kb on - strand, within GFF2027 at 700.973 kb on - strand, within GFF2027 at 700.973 kb on - strand, within GFF2027 at 701.017 kb on + strand, within GFF2027 at 701.017 kb on + strand, within GFF2027 at 701.017 kb on + strand, within GFF2027 at 701.018 kb on - strand, within GFF2027 at 701.018 kb on - strand, within GFF2027 at 701.018 kb on - strand, within GFF2027 at 701.110 kb on + strand, within GFF2027 at 701.111 kb on - strand, within GFF2027 at 701.575 kb on - strand, within GFF2028 at 701.777 kb on + strand, within GFF2028 at 701.777 kb on + strand, within GFF2028 at 701.777 kb on + strand, within GFF2028 at 701.777 kb on + strand, within GFF2028 at 701.778 kb on - strand, within GFF2028 at 701.837 kb on + strand, within GFF2028 at 701.838 kb on - strand, within GFF2028 at 701.988 kb on + strand, within GFF2028 at 701.989 kb on - strand, within GFF2028 at 701.989 kb on - strand, within GFF2028 at 701.996 kb on + strand, within GFF2028 at 701.996 kb on + strand, within GFF2028 at 701.996 kb on + strand, within GFF2028 at 701.997 kb on - strand, within GFF2028 at 701.997 kb on - strand, within GFF2028 at 702.131 kb on + strand, within GFF2028 at 702.131 kb on + strand, within GFF2028 at 702.131 kb on + strand, within GFF2028 at 702.131 kb on + strand, within GFF2028 at 702.132 kb on - strand, within GFF2028 at 702.132 kb on - strand, within GFF2028 at 702.132 kb on - strand, within GFF2028 at 702.132 kb on - strand, within GFF2028 at 702.196 kb on - strand, within GFF2028 at 702.287 kb on + strand, within GFF2028 at 702.287 kb on + strand, within GFF2028 at 702.287 kb on + strand, within GFF2028 at 702.287 kb on + strand, within GFF2028 at 702.288 kb on - strand, within GFF2028 at 702.290 kb on + strand, within GFF2028 at 702.290 kb on + strand, within GFF2028 at 702.291 kb on - strand, within GFF2028 at 702.339 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 699,342 + -0.9 699,343 - -0.5 699,343 - +0.3 699,434 - GFF2026 0.16 -1.1 699,440 + GFF2026 0.17 -0.1 699,440 + GFF2026 0.17 +0.6 699,441 - GFF2026 0.17 +0.4 699,652 + GFF2026 0.57 -0.6 699,670 - GFF2026 0.60 -0.3 699,880 + +0.6 699,880 + -0.7 699,880 + -0.9 699,880 + -0.1 699,880 + -0.3 699,880 + -0.2 699,881 - -0.7 699,881 - -0.0 699,881 - +2.2 699,881 - -0.2 700,331 + GFF2027 0.26 -0.4 700,332 - GFF2027 0.26 +0.3 700,333 + GFF2027 0.26 -0.4 700,384 + GFF2027 0.30 -0.3 700,442 - GFF2027 0.34 -1.0 700,481 - GFF2027 0.37 +0.4 700,481 - GFF2027 0.37 +0.1 700,481 - GFF2027 0.37 +0.3 700,481 - GFF2027 0.37 -0.3 700,481 - GFF2027 0.37 -0.2 700,801 + GFF2027 0.59 -0.1 700,802 - GFF2027 0.59 -0.3 700,802 - GFF2027 0.59 -0.8 700,904 - GFF2027 0.66 +0.6 700,973 - GFF2027 0.71 -0.2 700,973 - GFF2027 0.71 -1.4 701,017 + GFF2027 0.74 +0.5 701,017 + GFF2027 0.74 -0.3 701,017 + GFF2027 0.74 -0.1 701,018 - GFF2027 0.74 +0.3 701,018 - GFF2027 0.74 +0.9 701,018 - GFF2027 0.74 +0.0 701,110 + GFF2027 0.81 -0.6 701,111 - GFF2027 0.81 -1.2 701,575 - GFF2028 0.19 +0.4 701,777 + GFF2028 0.38 +0.2 701,777 + GFF2028 0.38 +0.3 701,777 + GFF2028 0.38 -0.4 701,777 + GFF2028 0.38 +0.4 701,778 - GFF2028 0.38 -1.2 701,837 + GFF2028 0.44 +0.3 701,838 - GFF2028 0.44 -0.4 701,988 + GFF2028 0.58 +0.0 701,989 - GFF2028 0.58 -0.6 701,989 - GFF2028 0.58 -0.1 701,996 + GFF2028 0.58 -0.8 701,996 + GFF2028 0.58 -0.0 701,996 + GFF2028 0.58 +1.1 701,997 - GFF2028 0.59 -0.6 701,997 - GFF2028 0.59 -0.6 702,131 + GFF2028 0.71 -0.1 702,131 + GFF2028 0.71 +0.6 702,131 + GFF2028 0.71 -0.7 702,131 + GFF2028 0.71 -0.2 702,132 - GFF2028 0.71 +0.5 702,132 - GFF2028 0.71 -0.6 702,132 - GFF2028 0.71 -0.4 702,132 - GFF2028 0.71 +1.0 702,196 - GFF2028 0.77 +0.1 702,287 + GFF2028 0.86 -0.2 702,287 + GFF2028 0.86 -0.6 702,287 + GFF2028 0.86 -0.7 702,287 + GFF2028 0.86 -0.2 702,288 - GFF2028 0.86 -1.2 702,290 + GFF2028 0.86 -1.2 702,290 + GFF2028 0.86 -0.7 702,291 - GFF2028 0.86 -0.4 702,339 - +0.3
Or see this region's nucleotide sequence