Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2010 and GFF2011 are separated by 208 nucleotides GFF2011 and GFF2012 are separated by 125 nucleotides
GFF2010 - 5-(hydroxymethyl)furfural oxidase, at 680,604 to 682,319
GFF2010
GFF2011 - PCP degradation transcriptional activation protein, at 682,528 to 683,439
GFF2011
GFF2012 - Glutathione-regulated potassium-efflux system ancillary protein KefF, at 683,565 to 684,356
GFF2012
Position (kb) 682
683
684 Strain fitness (log2 ratio) -2
-1
0
1
2 at 681.556 kb on - strand, within GFF2010 at 681.572 kb on - strand, within GFF2010 at 681.588 kb on + strand, within GFF2010 at 681.589 kb on - strand, within GFF2010 at 681.589 kb on - strand, within GFF2010 at 681.657 kb on + strand, within GFF2010 at 681.657 kb on + strand, within GFF2010 at 681.657 kb on + strand, within GFF2010 at 681.658 kb on - strand, within GFF2010 at 681.714 kb on + strand, within GFF2010 at 682.215 kb on - strand at 682.216 kb on - strand at 682.264 kb on - strand at 682.421 kb on - strand at 682.477 kb on + strand at 682.477 kb on + strand at 682.478 kb on - strand at 682.499 kb on - strand at 682.529 kb on + strand at 682.530 kb on - strand at 682.871 kb on + strand, within GFF2011 at 682.871 kb on + strand, within GFF2011 at 682.872 kb on - strand, within GFF2011 at 682.872 kb on - strand, within GFF2011 at 682.872 kb on - strand, within GFF2011 at 682.872 kb on - strand, within GFF2011 at 682.872 kb on - strand, within GFF2011 at 682.872 kb on - strand, within GFF2011 at 682.872 kb on - strand, within GFF2011 at 682.872 kb on - strand, within GFF2011 at 682.931 kb on + strand, within GFF2011 at 682.931 kb on + strand, within GFF2011 at 682.931 kb on + strand, within GFF2011 at 682.931 kb on + strand, within GFF2011 at 682.931 kb on + strand, within GFF2011 at 682.931 kb on + strand, within GFF2011 at 682.931 kb on + strand, within GFF2011 at 682.931 kb on + strand, within GFF2011 at 682.932 kb on - strand, within GFF2011 at 682.932 kb on - strand, within GFF2011 at 682.932 kb on - strand, within GFF2011 at 683.124 kb on + strand, within GFF2011 at 683.124 kb on + strand, within GFF2011 at 683.124 kb on + strand, within GFF2011 at 683.125 kb on - strand, within GFF2011 at 683.126 kb on + strand, within GFF2011 at 683.126 kb on + strand, within GFF2011 at 683.126 kb on + strand, within GFF2011 at 683.127 kb on - strand, within GFF2011 at 683.127 kb on - strand, within GFF2011 at 683.127 kb on - strand, within GFF2011 at 683.127 kb on - strand, within GFF2011 at 683.434 kb on - strand at 683.494 kb on + strand at 683.495 kb on - strand at 683.495 kb on - strand at 683.784 kb on + strand, within GFF2012 at 683.784 kb on + strand, within GFF2012 at 683.784 kb on + strand, within GFF2012 at 683.785 kb on - strand, within GFF2012 at 683.877 kb on + strand, within GFF2012 at 683.877 kb on + strand, within GFF2012 at 683.919 kb on + strand, within GFF2012 at 683.920 kb on - strand, within GFF2012 at 683.937 kb on + strand, within GFF2012 at 683.971 kb on - strand, within GFF2012 at 684.039 kb on + strand, within GFF2012 at 684.109 kb on - strand, within GFF2012 at 684.145 kb on - strand, within GFF2012 at 684.405 kb on - strand at 684.405 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 681,556 - GFF2010 0.55 -0.6 681,572 - GFF2010 0.56 -0.6 681,588 + GFF2010 0.57 -0.5 681,589 - GFF2010 0.57 -0.7 681,589 - GFF2010 0.57 -0.8 681,657 + GFF2010 0.61 +0.2 681,657 + GFF2010 0.61 +0.2 681,657 + GFF2010 0.61 +0.5 681,658 - GFF2010 0.61 +0.5 681,714 + GFF2010 0.65 +0.0 682,215 - +1.4 682,216 - -0.4 682,264 - +1.4 682,421 - +0.9 682,477 + -0.5 682,477 + -0.7 682,478 - -1.1 682,499 - +0.3 682,529 + -0.1 682,530 - +0.7 682,871 + GFF2011 0.38 -1.1 682,871 + GFF2011 0.38 +0.2 682,872 - GFF2011 0.38 -1.7 682,872 - GFF2011 0.38 -0.1 682,872 - GFF2011 0.38 +0.3 682,872 - GFF2011 0.38 -0.8 682,872 - GFF2011 0.38 -0.1 682,872 - GFF2011 0.38 +0.3 682,872 - GFF2011 0.38 -0.1 682,872 - GFF2011 0.38 +1.2 682,931 + GFF2011 0.44 -1.0 682,931 + GFF2011 0.44 -0.4 682,931 + GFF2011 0.44 +0.6 682,931 + GFF2011 0.44 +0.5 682,931 + GFF2011 0.44 -1.5 682,931 + GFF2011 0.44 -0.1 682,931 + GFF2011 0.44 +0.1 682,931 + GFF2011 0.44 +0.2 682,932 - GFF2011 0.44 -1.3 682,932 - GFF2011 0.44 +0.1 682,932 - GFF2011 0.44 -0.1 683,124 + GFF2011 0.65 +0.4 683,124 + GFF2011 0.65 +0.7 683,124 + GFF2011 0.65 +0.5 683,125 - GFF2011 0.65 +1.9 683,126 + GFF2011 0.66 -0.5 683,126 + GFF2011 0.66 +0.4 683,126 + GFF2011 0.66 -0.0 683,127 - GFF2011 0.66 +0.9 683,127 - GFF2011 0.66 +0.6 683,127 - GFF2011 0.66 -0.3 683,127 - GFF2011 0.66 -1.8 683,434 - +1.4 683,494 + +0.1 683,495 - -0.1 683,495 - -0.4 683,784 + GFF2012 0.28 +0.2 683,784 + GFF2012 0.28 -0.4 683,784 + GFF2012 0.28 -0.1 683,785 - GFF2012 0.28 -0.1 683,877 + GFF2012 0.39 +0.4 683,877 + GFF2012 0.39 +0.1 683,919 + GFF2012 0.45 -0.1 683,920 - GFF2012 0.45 -0.3 683,937 + GFF2012 0.47 +0.3 683,971 - GFF2012 0.51 +0.2 684,039 + GFF2012 0.60 -0.1 684,109 - GFF2012 0.69 -0.8 684,145 - GFF2012 0.73 +0.4 684,405 - +1.3 684,405 - -0.8
Or see this region's nucleotide sequence