Strain Fitness in Xanthobacter sp. DMC5 around GFF2001

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1999 and GFF2000 overlap by 1 nucleotidesGFF2000 and GFF2001 are separated by 17 nucleotidesGFF2001 and GFF2002 are separated by 202 nucleotides GFF1999 - Vitamin B12 import ATP-binding protein BtuD, at 666,531 to 667,367 GFF1999 GFF2000 - Putative aliphatic sulfonates transport permease protein SsuC, at 667,367 to 668,137 GFF2000 GFF2001 - HTH-type transcriptional activator RhaS, at 668,155 to 668,994 GFF2001 GFF2002 - hypothetical protein, at 669,197 to 672,193 GFF2002 Position (kb) 668 669Strain fitness (log2 ratio) -2 -1 0 1 2at 667.285 kb on - strandat 667.630 kb on + strand, within GFF2000at 667.680 kb on - strand, within GFF2000at 667.775 kb on + strand, within GFF2000at 667.776 kb on - strand, within GFF2000at 667.776 kb on - strand, within GFF2000at 667.776 kb on - strand, within GFF2000at 667.792 kb on + strand, within GFF2000at 667.793 kb on - strand, within GFF2000at 667.826 kb on + strand, within GFF2000at 667.826 kb on + strand, within GFF2000at 667.826 kb on + strand, within GFF2000at 667.827 kb on - strand, within GFF2000at 667.847 kb on + strand, within GFF2000at 667.847 kb on + strand, within GFF2000at 667.994 kb on + strand, within GFF2000at 667.994 kb on + strand, within GFF2000at 667.995 kb on - strand, within GFF2000at 667.995 kb on - strand, within GFF2000at 668.039 kb on + strand, within GFF2000at 668.039 kb on + strand, within GFF2000at 668.039 kb on + strand, within GFF2000at 668.039 kb on + strand, within GFF2000at 668.039 kb on + strand, within GFF2000at 668.039 kb on + strand, within GFF2000at 668.039 kb on + strand, within GFF2000at 668.040 kb on - strand, within GFF2000at 668.040 kb on - strand, within GFF2000at 668.040 kb on - strand, within GFF2000at 668.057 kb on - strand, within GFF2000at 668.136 kb on - strandat 668.360 kb on + strand, within GFF2001at 668.362 kb on + strand, within GFF2001at 668.362 kb on + strand, within GFF2001at 668.362 kb on + strand, within GFF2001at 668.363 kb on - strand, within GFF2001at 668.363 kb on - strand, within GFF2001at 668.363 kb on - strand, within GFF2001at 668.363 kb on - strand, within GFF2001at 668.363 kb on - strand, within GFF2001at 668.363 kb on - strand, within GFF2001at 668.363 kb on - strand, within GFF2001at 668.363 kb on - strand, within GFF2001at 668.393 kb on + strand, within GFF2001at 668.394 kb on - strand, within GFF2001at 668.407 kb on + strand, within GFF2001at 668.408 kb on - strand, within GFF2001at 668.408 kb on - strand, within GFF2001at 668.409 kb on + strand, within GFF2001at 668.727 kb on + strand, within GFF2001at 668.727 kb on + strand, within GFF2001at 668.727 kb on + strand, within GFF2001at 668.815 kb on + strand, within GFF2001at 668.815 kb on + strand, within GFF2001at 668.815 kb on + strand, within GFF2001at 668.816 kb on - strand, within GFF2001at 668.816 kb on - strand, within GFF2001at 668.816 kb on - strand, within GFF2001at 668.883 kb on + strand, within GFF2001at 668.943 kb on + strandat 668.943 kb on + strandat 669.562 kb on - strand, within GFF2002at 669.596 kb on + strand, within GFF2002at 669.596 kb on + strand, within GFF2002at 669.597 kb on - strand, within GFF2002at 669.705 kb on - strand, within GFF2002at 669.798 kb on - strand, within GFF2002at 669.798 kb on - strand, within GFF2002at 669.798 kb on - strand, within GFF2002at 669.798 kb on - strand, within GFF2002at 669.815 kb on + strand, within GFF2002at 669.836 kb on + strand, within GFF2002at 669.981 kb on - strand, within GFF2002

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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667,285 - -0.2
667,630 + GFF2000 0.34 -0.1
667,680 - GFF2000 0.41 -0.0
667,775 + GFF2000 0.53 -0.9
667,776 - GFF2000 0.53 -1.3
667,776 - GFF2000 0.53 +0.7
667,776 - GFF2000 0.53 +0.6
667,792 + GFF2000 0.55 -0.6
667,793 - GFF2000 0.55 -0.2
667,826 + GFF2000 0.60 -1.3
667,826 + GFF2000 0.60 -0.3
667,826 + GFF2000 0.60 -1.0
667,827 - GFF2000 0.60 +0.2
667,847 + GFF2000 0.62 +0.2
667,847 + GFF2000 0.62 +0.7
667,994 + GFF2000 0.81 -0.4
667,994 + GFF2000 0.81 -0.0
667,995 - GFF2000 0.81 +0.6
667,995 - GFF2000 0.81 -0.4
668,039 + GFF2000 0.87 -0.7
668,039 + GFF2000 0.87 +0.9
668,039 + GFF2000 0.87 -0.3
668,039 + GFF2000 0.87 -0.2
668,039 + GFF2000 0.87 +0.5
668,039 + GFF2000 0.87 +0.1
668,039 + GFF2000 0.87 +2.1
668,040 - GFF2000 0.87 +0.1
668,040 - GFF2000 0.87 +0.3
668,040 - GFF2000 0.87 +0.0
668,057 - GFF2000 0.89 +0.2
668,136 - +0.5
668,360 + GFF2001 0.24 -0.2
668,362 + GFF2001 0.25 -0.6
668,362 + GFF2001 0.25 +0.5
668,362 + GFF2001 0.25 +0.0
668,363 - GFF2001 0.25 +0.5
668,363 - GFF2001 0.25 +0.6
668,363 - GFF2001 0.25 +1.5
668,363 - GFF2001 0.25 +0.0
668,363 - GFF2001 0.25 -0.4
668,363 - GFF2001 0.25 +0.9
668,363 - GFF2001 0.25 +1.1
668,363 - GFF2001 0.25 -0.8
668,393 + GFF2001 0.28 -0.3
668,394 - GFF2001 0.28 -0.6
668,407 + GFF2001 0.30 +0.2
668,408 - GFF2001 0.30 +0.2
668,408 - GFF2001 0.30 -0.7
668,409 + GFF2001 0.30 +0.4
668,727 + GFF2001 0.68 -1.3
668,727 + GFF2001 0.68 -0.2
668,727 + GFF2001 0.68 +0.4
668,815 + GFF2001 0.79 +0.3
668,815 + GFF2001 0.79 -1.9
668,815 + GFF2001 0.79 -0.8
668,816 - GFF2001 0.79 -0.3
668,816 - GFF2001 0.79 -0.3
668,816 - GFF2001 0.79 +0.5
668,883 + GFF2001 0.87 -0.5
668,943 + -0.5
668,943 + +0.5
669,562 - GFF2002 0.12 +1.4
669,596 + GFF2002 0.13 -0.6
669,596 + GFF2002 0.13 +0.5
669,597 - GFF2002 0.13 +0.3
669,705 - GFF2002 0.17 -0.1
669,798 - GFF2002 0.20 -0.3
669,798 - GFF2002 0.20 -0.1
669,798 - GFF2002 0.20 +0.2
669,798 - GFF2002 0.20 -0.6
669,815 + GFF2002 0.21 -0.1
669,836 + GFF2002 0.21 +1.4
669,981 - GFF2002 0.26 -1.4

Or see this region's nucleotide sequence