Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF199 and GFF200 are separated by 7 nucleotides GFF200 and GFF201 are separated by 211 nucleotides
GFF199 - Type I secretion system membrane fusion protein PrsE, at 208,521 to 209,864
GFF199
GFF200 - Type I secretion system ATP-binding protein PrsD, at 209,872 to 211,704
GFF200
GFF201 - hypothetical protein, at 211,916 to 213,325
GFF201
Position (kb) 209
210
211
212 Strain fitness (log2 ratio) -1
0
1 at 208.989 kb on + strand, within GFF199 at 208.990 kb on - strand, within GFF199 at 209.150 kb on + strand, within GFF199 at 209.151 kb on - strand, within GFF199 at 209.800 kb on + strand at 210.122 kb on - strand, within GFF200 at 210.122 kb on - strand, within GFF200 at 210.122 kb on - strand, within GFF200 at 210.145 kb on - strand, within GFF200 at 210.315 kb on - strand, within GFF200 at 210.408 kb on + strand, within GFF200 at 210.456 kb on - strand, within GFF200 at 210.456 kb on - strand, within GFF200 at 210.771 kb on - strand, within GFF200 at 211.217 kb on + strand, within GFF200 at 211.218 kb on - strand, within GFF200 at 211.247 kb on + strand, within GFF200 at 211.247 kb on + strand, within GFF200 at 211.247 kb on + strand, within GFF200 at 211.247 kb on + strand, within GFF200 at 211.248 kb on - strand, within GFF200 at 211.248 kb on - strand, within GFF200 at 211.248 kb on - strand, within GFF200 at 211.264 kb on + strand, within GFF200 at 211.264 kb on + strand, within GFF200 at 211.265 kb on - strand, within GFF200 at 211.301 kb on - strand, within GFF200 at 211.475 kb on + strand, within GFF200 at 211.495 kb on - strand, within GFF200 at 211.544 kb on + strand at 211.544 kb on + strand at 211.544 kb on + strand at 211.560 kb on - strand at 211.560 kb on - strand at 211.697 kb on - strand at 211.773 kb on + strand at 211.773 kb on + strand at 211.773 kb on + strand at 211.872 kb on + strand at 212.132 kb on + strand, within GFF201 at 212.132 kb on + strand, within GFF201 at 212.133 kb on - strand, within GFF201 at 212.432 kb on + strand, within GFF201 at 212.433 kb on - strand, within GFF201
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 208,989 + GFF199 0.35 -0.1 208,990 - GFF199 0.35 -0.1 209,150 + GFF199 0.47 +0.5 209,151 - GFF199 0.47 -0.8 209,800 + +1.3 210,122 - GFF200 0.14 -0.4 210,122 - GFF200 0.14 -0.7 210,122 - GFF200 0.14 +0.1 210,145 - GFF200 0.15 -0.2 210,315 - GFF200 0.24 -1.1 210,408 + GFF200 0.29 +0.2 210,456 - GFF200 0.32 -0.6 210,456 - GFF200 0.32 +0.4 210,771 - GFF200 0.49 -0.2 211,217 + GFF200 0.73 +0.1 211,218 - GFF200 0.73 +0.0 211,247 + GFF200 0.75 -0.4 211,247 + GFF200 0.75 -1.2 211,247 + GFF200 0.75 +0.0 211,247 + GFF200 0.75 -0.8 211,248 - GFF200 0.75 -0.3 211,248 - GFF200 0.75 +1.2 211,248 - GFF200 0.75 -1.5 211,264 + GFF200 0.76 -0.9 211,264 + GFF200 0.76 +0.8 211,265 - GFF200 0.76 -0.4 211,301 - GFF200 0.78 +0.5 211,475 + GFF200 0.87 -0.2 211,495 - GFF200 0.89 -0.4 211,544 + +1.0 211,544 + +0.1 211,544 + -0.1 211,560 - +0.8 211,560 - +1.0 211,697 - +0.8 211,773 + +0.5 211,773 + -0.2 211,773 + +0.5 211,872 + -0.5 212,132 + GFF201 0.15 -1.2 212,132 + GFF201 0.15 +0.2 212,133 - GFF201 0.15 -0.7 212,432 + GFF201 0.37 -0.5 212,433 - GFF201 0.37 -0.2
Or see this region's nucleotide sequence