Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1992 and GFF1993 are separated by 118 nucleotides GFF1993 and GFF1994 are separated by 53 nucleotides GFF1994 and GFF1995 are separated by 64 nucleotides
GFF1992 - Pyrethroid hydrolase, at 659,195 to 659,929
GFF1992
GFF1993 - hypothetical protein, at 660,048 to 660,551
GFF1993
GFF1994 - (S)-mandelate dehydrogenase, at 660,605 to 661,900
GFF1994
GFF1995 - Hydrogen peroxide-inducible genes activator, at 661,965 to 662,954
GFF1995
Position (kb) 660
661
662 Strain fitness (log2 ratio) -2
-1
0
1 at 659.607 kb on + strand, within GFF1992 at 659.607 kb on + strand, within GFF1992 at 659.608 kb on - strand, within GFF1992 at 660.015 kb on - strand at 660.027 kb on + strand at 660.094 kb on - strand at 660.094 kb on - strand at 660.465 kb on - strand, within GFF1993 at 660.503 kb on + strand at 660.620 kb on + strand at 660.726 kb on + strand at 660.726 kb on + strand at 660.893 kb on + strand, within GFF1994 at 661.134 kb on + strand, within GFF1994 at 661.134 kb on + strand, within GFF1994 at 661.135 kb on - strand, within GFF1994 at 661.258 kb on + strand, within GFF1994 at 661.259 kb on - strand, within GFF1994 at 661.383 kb on + strand, within GFF1994 at 661.384 kb on - strand, within GFF1994 at 661.461 kb on + strand, within GFF1994 at 661.461 kb on + strand, within GFF1994 at 661.462 kb on - strand, within GFF1994 at 661.962 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 659,607 + GFF1992 0.56 +0.7 659,607 + GFF1992 0.56 -1.4 659,608 - GFF1992 0.56 -0.2 660,015 - +0.4 660,027 + -1.0 660,094 - +0.6 660,094 - +1.2 660,465 - GFF1993 0.83 +0.4 660,503 + -0.2 660,620 + +0.7 660,726 + -0.0 660,726 + -0.4 660,893 + GFF1994 0.22 -0.7 661,134 + GFF1994 0.41 -0.3 661,134 + GFF1994 0.41 +0.6 661,135 - GFF1994 0.41 +0.9 661,258 + GFF1994 0.50 -2.2 661,259 - GFF1994 0.50 -1.6 661,383 + GFF1994 0.60 +0.9 661,384 - GFF1994 0.60 -0.1 661,461 + GFF1994 0.66 -0.7 661,461 + GFF1994 0.66 -0.1 661,462 - GFF1994 0.66 +1.1 661,962 + +0.3
Or see this region's nucleotide sequence